View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16102_low_17 (Length: 207)
Name: NF16102_low_17
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16102_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 3980097 - 3980272
Alignment:
| Q |
15 |
taattctgaaggagggattctaacataaagatcttgtccccattgagagaatttcctcacatctatcagattattaaaccatatcagacatccagttcct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3980097 |
taattctgaaggagggattctaacataaagatcttgtccccattgagagaatttcctcacatctatcagattattaaaccatatcagacatccacttcct |
3980196 |
T |
|
| Q |
115 |
ccgttacgtatatcaatatttgcatacgctacacacgaactatttctcagacaccacttccggcattcctcaagat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3980197 |
ccgttacgtatatcaatatttgcatacgctacacacgaactatttctcagacaccacttccggcattcctcaagat |
3980272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 23363169 - 23363205
Alignment:
| Q |
29 |
ggattctaacataaagatcttgtccccattgagagaa |
65 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23363169 |
ggattctaacataaagatcttgtccccaatgagagaa |
23363205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 23348604 - 23348572
Alignment:
| Q |
33 |
tctaacataaagatcttgtccccattgagagaa |
65 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
23348604 |
tctaacataaagatcttgtccccaatgagagaa |
23348572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University