View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16102_low_2 (Length: 548)
Name: NF16102_low_2
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16102_low_2 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold1801 (1 HSPs) |
| | |
|
| [»] scaffold1118 (1 HSPs) |
| | |
|
| [»] scaffold0902 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 135214 - 135760
Alignment:
| Q |
1 |
gtttctttgtgatgaaattctgtattttt-gcatttt-gggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattag |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
135214 |
gtttctttgtgatgaaattctgtatttttcgcatttttgggtttctctaaaccattgccgacaaattgaaaaaggtt-aatttgttttgtttaggattag |
135312 |
T |
|
| Q |
99 |
ttgatttgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattttaatgtgtgnnnnnnnn- |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
135313 |
ttgatctgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttataattttagtgtgtgaaaaaaaaa |
135412 |
T |
|
| Q |
198 |
gatactttgatcctttaattggttgttcaaaatttcatcagt---aggatgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttc |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135413 |
gatactttaatcctttaattggttgttcaaaatttcatcagttgtaggatgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttc |
135512 |
T |
|
| Q |
295 |
ttttttctgaatgtgttgtgtgagcattagtgtggtgagattgttcaaaggaaagtgatttccatgaggtttgttgggtgtgatggcttgttcaactgaa |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
135513 |
ttttttctgaatgtgttgtgtgagcattagtgtggtgagattgttcaaaggaaagtgatttccatgacgcttgttgggtgtgatggcttgttcaactgaa |
135612 |
T |
|
| Q |
395 |
ttcactcggttattcactgttgcaggatcatttaatgtacttttcttgctcagttattgtctttgagattcttaccaacgagttttgaagctgcttcgga |
494 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135613 |
ttcactcggttattcactgttgcaggagcatttaatgtacttttcttgctcagttattgtctttgagattcttaccaacgagttttgaagctgcttcgga |
135712 |
T |
|
| Q |
495 |
atattcagttcctatctttttggtaatattcagttcctattcatctca |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
135713 |
atattcagttcctatctttttggtaatattcagttcctatttatctca |
135760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 448 - 541
Target Start/End: Complemental strand, 21303249 - 21303156
Alignment:
| Q |
448 |
ttattgtctttgagattcttaccaacgagttttgaagctgcttcggaatattcagttcctatctttttggtaatattcagttcctattcatctc |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21303249 |
ttattgtctttgagattcttaccaacgagttttgaagctgcttcggaatattcagttcctatctttttggtaatattcagttcctatttatctc |
21303156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 11954993 - 11955047
Alignment:
| Q |
63 |
attgaaaaaggtttaatttgttttgtttaggattagttgatttgtgatatggttt |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11954993 |
attgaaaaaggtttcatttgttttgtttaggattagttgatctgtgatatggttt |
11955047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 112047 - 112349
Alignment:
| Q |
1 |
gtttctttgtgatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112047 |
gtttctttgtgatgaaattctgtattttt-------gggtttctctaaaccattgccgataaattgaaaaaggtttaatttgttttgtttaggattagtt |
112139 |
T |
|
| Q |
101 |
gatttgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaatttta--atgtgtgnnnnnnnng |
198 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
112140 |
gatatgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattttagtgtgtgtgaaaaaagag |
112239 |
T |
|
| Q |
199 |
atactttgatcctttaattggttgttcaaaatttcatca---gtaggatgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttct |
295 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112240 |
ataatttgatcctttaattggttgttcaaaatttcatcagttgtaggatgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttct |
112339 |
T |
|
| Q |
296 |
tttttctgaa |
305 |
Q |
| |
|
|||||||||| |
|
|
| T |
112340 |
tttttctgaa |
112349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 112348 - 112426
Alignment:
| Q |
342 |
aaggaaagtgatttccatgaggtttgttgggtgtgatggcttgttcaactgaattcactcggttattcactgttgcaggatcatttaat |
430 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
112348 |
aaggaaagtgatttccatgaggcttgttgggtgt----------tcaactgaattcactcggttattcactgttgtaggagcatttaat |
112426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 20421382 - 20421688
Alignment:
| Q |
1 |
gtttctttgtgatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattagtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20421382 |
gtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgtttaggattagtt |
20421481 |
T |
|
| Q |
101 |
gatttgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattttaatgtgtgnnnnnnnngat |
200 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |
|
|
| T |
20421482 |
gatctgtgatatagtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctgtatgtatttgtaattttagtgtgtaaaaaaagagat |
20421581 |
T |
|
| Q |
201 |
actttgatcctttaattggttgttcaaaatttcatca---gtaggatgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttcttt |
297 |
Q |
| |
|
| ||||||||||||||| |||||| | |||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
20421582 |
aatttgatcctttaatttgttgtttagaatttcatcagttgtaggatgcaattacaatgattgtg---gttgtttctgatttttgacaactgatttcttt |
20421678 |
T |
|
| Q |
298 |
tttctgaatg |
307 |
Q |
| |
|
|||||||||| |
|
|
| T |
20421679 |
tttctgaatg |
20421688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 9e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 9884533 - 9884345
Alignment:
| Q |
1 |
gtttctttgtgatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattagtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9884533 |
gtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgtttaggattagtt |
9884434 |
T |
|
| Q |
101 |
gatttgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattttaatgtgtg |
189 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9884433 |
gatctgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattttagtgtgtg |
9884345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 14316261 - 14316084
Alignment:
| Q |
2 |
tttctttgtgatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattagttg |
101 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||| | |||| |||||| |||||||| | |
|
|
| T |
14316261 |
tttctttgtgaggaaatttagtatttttgcatttagggtttctttaaaccattgccacgaaattgaaaagagttca-tttgatttgttaaggattagaag |
14316163 |
T |
|
| Q |
102 |
atttgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattt |
180 |
Q |
| |
|
|| | || ||||||||| ||||||| |||| |||||| |||| ||||||||| |||| | || |||||||||||||||| |
|
|
| T |
14316162 |
atctatgttatggtttggttttgttactatagtgaataattttaaatgtattcttcactactttatgtatttgtaattt |
14316084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 9884308 - 9884267
Alignment:
| Q |
266 |
gttgtttatgatttttgacaactgatttcttttttctgaatg |
307 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9884308 |
gttgtttctgatttttgacaactgatttcttttttctgaatg |
9884267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 14247731 - 14247683
Alignment:
| Q |
2 |
tttctttgtgatgaaattctgtatttttgcattttgggtttctctaaac |
50 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
14247731 |
tttctttgtgatgaaatttagtatttttgcatttagggtttctctaaac |
14247683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 15607172 - 15607470
Alignment:
| Q |
1 |
gtttctttgtgatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |||||||||| ||||| ||||||||||||| |||| ||||| || |||||||||||||| |
|
|
| T |
15607172 |
gtttctttgtgatgaaattctgtattttcgtattttggttttctctaaattattgccaagaaattgaaaaatgtttcatttgcttagtttaggattagtt |
15607271 |
T |
|
| Q |
101 |
gatttgtgatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattttaatgtgtgnnnnnnnngat |
200 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
15607272 |
gatctgtaatatggtttgattttgttgctatggtgaatgatttgaaatgtatttttcactgctatatgtacttgtaattttagtgtgtgaaaatggagat |
15607371 |
T |
|
| Q |
201 |
actttgatcctttaattggttgttcaaaatttcatca---gtaggatgcaactacaatgattgtggctgttgtttatgatttttgacaactgatttctt |
296 |
Q |
| |
|
| |||||||||||||| |||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
15607372 |
aacttgatcctttaatttgttgttcagaattttatcagttgtaggatgcaagtacaatgattgtggctgttgtttctgatttttgacaactgaattctt |
15607470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 36910017 - 36909830
Alignment:
| Q |
1 |
gtttctttgtgatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtt--taggattag |
98 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||| ||||||| ||||| |||||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
36910017 |
gtttctttgctatgaaatttagtatttttacattttgggtttttctaaactattgccaagaaattgaaaagggtttcatttgttttgtttataggattag |
36909918 |
T |
|
| Q |
99 |
ttgatttgtgatatggtttg---attttgttgctatggtgaatgatttgaaatgt--atttttcattgctatatgtatttgtaatttt |
181 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| |||||||||||||||| | |||||| || ||||||| ||||| ||||| |
|
|
| T |
36909917 |
gtgatctgtgatatggtttggtttttttgttgatatggagaatgatttgaaatgtaaaattttcactgttatatgtgtttgtgatttt |
36909830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 755 - 937
Alignment:
| Q |
1 |
gtttctttgtgatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattagtt |
100 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||| || ||| |||| || ||||||| |
|
|
| T |
755 |
gtttctctgtgataaaatttagtatttttgcattttgggtttttctaaaccattgtcacgaaattg-aaaagagttcattaaatttgattcggattagac |
853 |
T |
|
| Q |
101 |
gatttgtgatatggtttgattttgttgctat----ggtgaatgatttgaaatgtatttttcattgctatatgtatttgtaattt |
180 |
Q |
| |
|
||| |||| ||||||||| ||||||| |||| | |||||||||| ||||||||| |||| | ||||||||||||| ||||| |
|
|
| T |
854 |
gatctgtgttatggtttggttttgttactatataagatgaatgattttaaatgtattcttcactactatatgtatttgaaattt |
937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2274 - 2116
Alignment:
| Q |
1 |
gtttctttgtgatgaaattct--gtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttaatttgttttgtttaggattag |
98 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||| || ||||| || |||||||||||| |
|
|
| T |
2274 |
gtttctttgtgatgaaatttatagtatttttgcattttgtgtttctctaaaccattgtcacgaaattg-aaaagagttcatttgattcgtttaggattag |
2176 |
T |
|
| Q |
99 |
ttgatttgtgatatggtttgattttgttgc----tatggtgaatgatttgaaatgtattt |
154 |
Q |
| |
|
||||||| |||| |||| ||||||| | |||||||||| |||| |||||||||| |
|
|
| T |
2175 |
acaatttgtgttatgatttggttttgttactatatatggtgaataattttaaatgtattt |
2116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 2023 - 1991
Alignment:
| Q |
24 |
atttttgcattttgggtttctctaaaccattgc |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2023 |
atttttgcattttgggtttctctaaaccattgc |
1991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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