View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16102_low_3 (Length: 545)
Name: NF16102_low_3
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16102_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Original strand, 170317 - 170801
Alignment:
| Q |
20 |
tgacatatacccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcata |
119 |
Q |
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| T |
170317 |
tgacatatacccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcata |
170416 |
T |
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| Q |
120 |
tcaactttctctagcacctttttaatgtagcttttatgagagagtcataattttctagcactcatatccttgaggtagtcgttttcgtgtagactactta |
219 |
Q |
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| T |
170417 |
tcaactttctctagcacctttttaatgtagcttttatgagagagtcataattttctagcactcatatccttgagatagtcgttttcgtgtagactactta |
170516 |
T |
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| Q |
220 |
cggaaatcaagttctttttcaattttgaaatacctcacttgaatgtagtgaaccacttccattgcagcgtcatgtggtaagaacaaccaaagtcaagaat |
319 |
Q |
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| T |
170517 |
cggaaatcaagttctttttcaattttgaaatacctcacttgaatgtagtgaaccacttccagtgcggcgtcatgtggtaagaacaaccaaagtcaagaat |
170616 |
T |
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| Q |
320 |
ccacacataagcacacttgtcaggtgaaacacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacggatcatat |
419 |
Q |
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| T |
170617 |
ccacacataagcacacttgccaggtgaaacacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacgggtcatat |
170716 |
T |
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| Q |
420 |
tttttgctcggacaatacctctttcaatgcttgatatgttaccaatcaaagcactaaattgttattctgttctttaattttgatc |
504 |
Q |
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| T |
170717 |
tttttgttcggacaatacctctttcaatgcttgatatgttaccaaccaaagcactaaattgttattttgttctttaattttgatc |
170801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 9837827 - 9837658
Alignment:
| Q |
22 |
acatatacccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatc |
121 |
Q |
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| T |
9837827 |
acatatactcaacttctacatttgtctttaaacactaatcaaacgagaacttaaaatgatttgtcaatgaagtactcgcagtcttcaaattgctcatgtc |
9837728 |
T |
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| Q |
122 |
aactttctctagcacctttttaatgtagcttttatgagagagtcataattttctagcactcatatccttg |
191 |
Q |
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| T |
9837727 |
aaatttttctaacacctattcaacatagctttttttagaaagccataactttctagcactcttgtccttg |
9837658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 33559659 - 33559721
Alignment:
| Q |
20 |
tgacatatacccaacttcttcatctgtctttggacactaatcaaatgagagttttaagtgatt |
82 |
Q |
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| T |
33559659 |
tgacatatacttaacttctgcatctatctttggacactaatccaatgagagcttcaagtgatt |
33559721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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