View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16102_low_5 (Length: 388)
Name: NF16102_low_5
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16102_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 58 - 388
Target Start/End: Complemental strand, 6289799 - 6289469
Alignment:
| Q |
58 |
atgcatatcaaatttcatacgtaccttgagttcgtagcgcctattaaagaaaaggcagatcccaaagtgtttgaagagcatatccttatcatcatagggc |
157 |
Q |
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| T |
6289799 |
atgcacatcaaatttcatacgtaccttgagttcgtagcgcctattaaagaaaaggcagatcccaaagtgtttgaagagcatatccttatcatcatagggc |
6289700 |
T |
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| Q |
158 |
aaccttggaacaatgtcattgcaataaacaaacctacaataggttatacgattttccttcattttttgtgtcatatattgtgtatatctctcatctccaa |
257 |
Q |
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| T |
6289699 |
aaccttggaacaatgtcattgcaataaacaaacctgcaataggttatacgattttccttcattttttgtgtcatatattgtgtatatctctcatctccaa |
6289600 |
T |
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| Q |
258 |
ctcttggttgtccaaatgtgtaaatcccttccaacctctcaatcaacaatttctcatcatgtaagaacataattgttggaaaaagtattgctaatgcacc |
357 |
Q |
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| T |
6289599 |
ctcttggttgtccaaatgtgtaaatcccttccaacctctcaatcaacaatttctcatcatgtaagaacataattgttggaaaaagtattgctaatgcacc |
6289500 |
T |
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| Q |
358 |
acccaaactatgacccgtaattataaacttt |
388 |
Q |
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| T |
6289499 |
acccaaactatgacccgtaattataaacttt |
6289469 |
T |
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