View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16102_low_6 (Length: 355)
Name: NF16102_low_6
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16102_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 48975261 - 48975584
Alignment:
| Q |
13 |
aatatctaattatattaatagttacacaaactaaactaatcatttaacttctatctgatagcactaggaaataggttttgcctaaaaagaaatgacataa |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48975261 |
aatatctaattttattaatagttacacaaactaaactaatcatttaacttctatctgatagcactaggaaataggttttgcctaaaaagaaatgaca--a |
48975358 |
T |
|
| Q |
113 |
atttggttttataaagtcaataggatctgcaataagagtgaaacaaaataaaaatccaggaatatagaattcaagaaaactatatccaatacctatcagg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48975359 |
atttggttttataaagtcaataggatctgcaataagagtgaaacaaaataaaaatccaggaatatagaattcaagaaaactatatccaatacctataagg |
48975458 |
T |
|
| Q |
213 |
ttgctttgcagtgtggattatataaaagtcttaccgtacacagttactag-aaaataatgatgtacaaagtgacaagaaaatacaacaaatctaagttga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48975459 |
ttgctttgcagtgtggattatataaaagttttaccgtacacagttactagaaaaacaatgatgtacaaagtgacaagaaaatacaacaaatctaagttga |
48975558 |
T |
|
| Q |
312 |
cattttcaaagaaaaaaccaagaagt |
337 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
48975559 |
cattatcaaagaaaaaaccaagaagt |
48975584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 1528726 - 1528635
Alignment:
| Q |
229 |
attatataaaagtcttaccgtacacagttactagaaaataatgatgtacaaagtgacaagaaaatacaacaaatctaagttgacattttcaa |
320 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||| |||||| || ||||| |||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
1528726 |
attatataaaaatcttaccgtacacaattactaggcaattatgatgcaccgagtgataagaaaatacaagaaatttaagctgacatcttcaa |
1528635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 6005975 - 6006007
Alignment:
| Q |
292 |
atacaacaaatctaagttgacattttcaaagaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6005975 |
atacaacaaatctaagttgacattttcaaagaa |
6006007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University