View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16102_low_7 (Length: 332)
Name: NF16102_low_7
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16102_low_7 |
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| [»] scaffold0046 (2 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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Alignment Details
Target: scaffold0046 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 101 - 314
Target Start/End: Complemental strand, 24318 - 24105
Alignment:
| Q |
101 |
ttaatccgataattccgatgggtgattttggtgctggtttttatcctttggtttgcggctgccttgtgttgtattctctagcgtgttgttgtttatgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24318 |
ttaatccgataattccgatgggtgattttggtgctggtttttatcctttggtttgcggctgccttgtgttgtattctctagcgtgttgttgtttatgtgg |
24219 |
T |
|
| Q |
201 |
ggttttgttttgaagcttttgggaaagttcacaactgccatagcctctgttgttagtttggcagcgtgttgttcctcctgttgggagcctttgttgttat |
300 |
Q |
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| T |
24218 |
ggttttgttttgaagcttttgggaaagttcacaactgccataggctctgttgttagtttggcagcgtgttgttcctcctgttgggagcctttgttgttat |
24119 |
T |
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| Q |
301 |
aacaggggcttctt |
314 |
Q |
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|||||||||||||| |
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| T |
24118 |
aacaggggcttctt |
24105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24386 - 24344
Alignment:
| Q |
1 |
tcaattcaaatcttgactcatcacttcttgaaaaaaattgaaa |
43 |
Q |
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| T |
24386 |
tcaattcaaatcttgactcatcacttcttgaaaaaaattgaaa |
24344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 12251 - 12576
Alignment:
| Q |
1 |
tcaattcaaatcttgactcatcacttcttgaaaaaaattgaaattgannnnnnnnnnnnnaatcagcaaaattgaaactgattgaattc----------- |
89 |
Q |
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| T |
12251 |
tcaattcaaatcttgactcaccacttcttgaaaaaaattgaaactgattttgttttttg-aatcagcaaaattgaaactgattgaattcaattgaggttg |
12349 |
T |
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| Q |
90 |
---ttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttggtttgcggctgccttgtgttgtattctctagcgtgt |
186 |
Q |
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| T |
12350 |
ttgttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttggtttgcagctgccttgtgttgtattctctaccgtgt |
12449 |
T |
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| Q |
187 |
tgttgtttatgtggggttttgttttgaagcttttgggaaagttcacaactgccatagcctctgttgttagtttggcagcgtgttgttcctcctgttggga |
286 |
Q |
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| T |
12450 |
tgttgtttaggtggggttttattttgaagcttttgggaaagttcacaactgccatag-ctctgttgttagtttggcagcgtgttgtagctcctgttggga |
12548 |
T |
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| Q |
287 |
gcctttgttgttataacaggggcttctt |
314 |
Q |
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| T |
12549 |
gcctttgtttttatgacaggggcttctt |
12576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 43895072 - 43894854
Alignment:
| Q |
89 |
cttggagaatgtttaatccgataattccgatgggtgattttggtgctggtttttatcctttggtttgcggctgccttgtgttgtattctctagcgtgttg |
188 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |
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| T |
43895072 |
cttggagaatgtttaatccgataattccgatggatgattttggtgctggtttttatcctttggtttgtggctatcttgtgttgtattctctatcgtgttg |
43894973 |
T |
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| Q |
189 |
ttgtttatgtggggttttgttttgaagcttttgggaaagttcacaactgccatagcctctgttgttagtttggcagcgtgttgttcctcctgttgggagc |
288 |
Q |
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| T |
43894972 |
ttgtttatgtggggttttattttgaagcttttgggaaagttcacaactgccataggctctgttgttagtttggcagcgtgttgttcctcttgttgggaac |
43894873 |
T |
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| Q |
289 |
ctttgttgttataacaggg |
307 |
Q |
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| T |
43894872 |
ctttgttgttataacaggg |
43894854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 43895122 - 43895094
Alignment:
| Q |
61 |
aatcagcaaaattgaaactgattgaattc |
89 |
Q |
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| T |
43895122 |
aatcagcaaaattgaaactgattgaattc |
43895094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 17345867 - 17345906
Alignment:
| Q |
3 |
aattcaaatcttgactcatcacttcttgaaaaaaattgaa |
42 |
Q |
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| T |
17345867 |
aattcaaatcttcactcaccacttcttgaaaaaaattgaa |
17345906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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