View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16102_low_8 (Length: 294)
Name: NF16102_low_8
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16102_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 2575574 - 2575319
Alignment:
| Q |
24 |
tgtgtgttttattacagcagatgatcttggtccaaaaaattaatgcaagatgcttttgaaacggttatatttgacttgagagcgacaaaaatataatatt |
123 |
Q |
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| T |
2575574 |
tgtgtgttttattacagcagatgatcttggtccaaaaaattaatgcaagatgcttttgaaacggttatatttgacttgagagcgacaaaaatataatatt |
2575475 |
T |
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| Q |
124 |
ataagatagaatgagaaaatatgcaatta--atattgcaatgaaaaaacaagagggtgcaactccacgtgttataagcaactccacgtgttagcatgaat |
221 |
Q |
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| T |
2575474 |
ataagatagaatgagaaaaaatgcaattaatatattgctatg-aaaaacaagagggtgcaactccacgtgttataagcaactccacgtgttagcatgaat |
2575376 |
T |
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| Q |
222 |
tacacaaaaatgttacagcattgatgaacaatttaacatacaagaccatattgaaag |
278 |
Q |
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| T |
2575375 |
tacacaaaaatgttacagcattgattaacaatttaacatacaagaccatattgaaag |
2575319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 2604098 - 2603992
Alignment:
| Q |
17 |
tgaaaattgtgtgttttattacagcagatgatcttggtccaaaaaattaatgcaagatgcttttgaaacggttatatttgacttgagagcgacaaaaata |
116 |
Q |
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| T |
2604098 |
tgaaaattgtgtgttttattacaacagatgatcttggtccgaaaaattaattcaagatacttttgaaaaggt--tagtttatttgagagtgataaaaata |
2604001 |
T |
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| Q |
117 |
taatattat |
125 |
Q |
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| T |
2604000 |
taatattat |
2603992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 2603360 - 2603317
Alignment:
| Q |
202 |
ctccacgtgttagcatgaattacacaaaaatgttacagcattga |
245 |
Q |
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| T |
2603360 |
ctccacgtgttatcatgaattacacaaaaatgttacagcattga |
2603317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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