View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16103_high_1 (Length: 324)

Name: NF16103_high_1
Description: NF16103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16103_high_1
NF16103_high_1
[»] chr2 (7 HSPs)
chr2 (7-304)||(18332510-18332804)
chr2 (7-140)||(20988628-20988761)
chr2 (7-122)||(28746922-28747037)
chr2 (201-303)||(23155032-23155133)
chr2 (201-303)||(23566289-23566390)
chr2 (66-107)||(26617494-26617535)
chr2 (81-134)||(28276925-28276978)
[»] chr4 (12 HSPs)
chr4 (16-135)||(31931689-31931808)
chr4 (178-306)||(11924276-11924402)
chr4 (208-306)||(12410539-12410636)
chr4 (208-303)||(20846758-20846852)
chr4 (183-306)||(12421929-12422050)
chr4 (66-135)||(44100607-44100676)
chr4 (201-303)||(17543608-17543707)
chr4 (33-127)||(12227468-12227562)
chr4 (33-123)||(24075229-24075319)
chr4 (7-107)||(20759098-20759198)
chr4 (7-107)||(20765489-20765589)
chr4 (81-136)||(25144660-25144715)
[»] chr8 (8 HSPs)
chr8 (7-134)||(24629888-24630015)
chr8 (7-136)||(27783565-27783694)
chr8 (7-118)||(10204709-10204819)
chr8 (181-303)||(23354634-23354755)
chr8 (7-108)||(26140297-26140398)
chr8 (137-181)||(24062674-24062718)
chr8 (60-128)||(8751887-8751953)
chr8 (66-135)||(22843333-22843402)
[»] chr6 (12 HSPs)
chr6 (16-135)||(14095756-14095875)
chr6 (19-136)||(5973004-5973121)
chr6 (19-136)||(8711001-8711118)
chr6 (41-131)||(20244288-20244378)
chr6 (41-131)||(22138272-22138362)
chr6 (240-303)||(23090931-23090994)
chr6 (7-126)||(24559940-24560059)
chr6 (41-122)||(5571298-5571379)
chr6 (7-115)||(3097475-3097583)
chr6 (7-105)||(18743938-18744036)
chr6 (7-124)||(19242924-19243038)
chr6 (66-118)||(23607969-23608021)
[»] chr7 (13 HSPs)
chr7 (7-136)||(7066774-7066903)
chr7 (7-136)||(12309566-12309695)
chr7 (10-136)||(16886467-16886593)
chr7 (207-303)||(6462006-6462101)
chr7 (196-303)||(22522753-22522858)
chr7 (33-140)||(26926614-26926721)
chr7 (201-303)||(13474565-13474667)
chr7 (16-107)||(7414171-7414262)
chr7 (38-134)||(13304240-13304336)
chr7 (16-104)||(12083080-12083168)
chr7 (81-135)||(23553540-23553594)
chr7 (7-107)||(27317781-27317887)
chr7 (16-107)||(31267223-31267313)
[»] chr5 (11 HSPs)
chr5 (7-136)||(10975924-10976053)
chr5 (7-127)||(28718192-28718309)
chr5 (28-135)||(16418085-16418192)
chr5 (35-120)||(21293958-21294041)
chr5 (7-108)||(19748209-19748310)
chr5 (66-119)||(37396844-37396897)
chr5 (81-136)||(34595421-34595476)
chr5 (16-107)||(15798053-15798144)
chr5 (16-93)||(31488140-31488217)
chr5 (7-107)||(23228634-23228734)
chr5 (200-284)||(34179211-34179292)
[»] chr1 (7 HSPs)
chr1 (7-135)||(21760350-21760478)
chr1 (33-135)||(26793432-26793534)
chr1 (60-107)||(15471671-15471718)
chr1 (66-135)||(27799782-27799851)
chr1 (7-107)||(19262375-19262475)
chr1 (60-122)||(11789165-11789227)
chr1 (66-108)||(48706930-48706972)
[»] chr3 (8 HSPs)
chr3 (16-127)||(55390749-55390860)
chr3 (33-135)||(20409753-20409855)
chr3 (7-136)||(17370923-17371052)
chr3 (7-136)||(1638569-1638698)
chr3 (46-122)||(50342620-50342696)
chr3 (255-303)||(17384752-17384800)
chr3 (60-135)||(17267309-17267384)
chr3 (68-119)||(29634931-29634982)
[»] scaffold0121 (1 HSPs)
scaffold0121 (18-107)||(5495-5584)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 18332804 - 18332510
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18332804 tccaacaaaataaagacactacatagtaatgatgctacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcaacaacg 18332705  T
Q  107 tagcttccatctcaatcctcggaaacatgcagtgtaacaccataaaccacatatgcaataaatcatgcaattaatcaagagcttggattctacatctaca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | || |||||||||||||||||||||||||||||||||    
T  18332704 tagcttccatctcaatcctcggaaacatgcagtgtaacaccataaaccacatatgcaat---taattcaattaatcaagagcttggattctacatctaca 18332608  T
Q  207 ttttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcctcaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18332607 ttttttccaaaacatgcataatctggtttttcctaaaaactagcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcctcaat 18332510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 20988761 - 20988628
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||||||| |||||| ||||||| |||| ||||||||||   ||||||||||| ||||||| | ||||||||||| |||||||||||||     
T  20988761 tccaacaaaataaagacattacataataatgatgctacctaaacataatttagtggcataatcgaactcttgagaatatcttcagacgatctcagcaaca 20988662  T
Q  107 tagcttccatctcaatcctcggaaacatgcagtg 140  Q
    || |||||||| |||| ||||| |||||||||||    
T  20988661 taacttccatcccaatactcgggaacatgcagtg 20988628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 28746922 - 28747037
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||| ||||| ||||||| ||||  |||||||||  | ||||| ||||||||| || | ||||| ||||||||||||||||||||    
T  28746922 tccaacaaaataaagacaccacataataatgatgctaccgaaacataattttctggcagaatcaaactgttgagaatattttcaggcgatctcagcaacg 28747021  T
Q  107 tagcttccatctcaat 122  Q
    ||||||||||||||||    
T  28747022 tagcttccatctcaat 28747037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 23155133 - 23155032
Alignment:
Q  201 tctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcct 300  Q
    |||| |||||| | |||||||| |||| |||| |||||||||||| || |||| |||| ||| || ||||||||||| |||||| |||||| | ||||||    
T  23155133 tctatatttttccaaaaacatgaataa-ctgggttttcctaaaaattctcaacggaaggcaaacaacatacataatacctcatcgccaagtgacaatcct 23155035  T
Q  301 caa 303  Q
    |||    
T  23155034 caa 23155032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 23566390 - 23566289
Alignment:
Q  201 tctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcct 300  Q
    |||| |||||| | |||||||| |||| |||| |||||||||||| || |||| |||| ||| || ||||||||||| |||||| |||||| | ||||||    
T  23566390 tctatatttttccaaaaacatgaataa-ctgggttttcctaaaaattctcaacggaaggcaaacaacatacataatacctcatcgccaagtgacaatcct 23566292  T
Q  301 caa 303  Q
    |||    
T  23566291 caa 23566289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 26617494 - 26617535
Alignment:
Q  66 aatcaaactcttcataatatcttcaggcgatctcagcaacgt 107  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  26617494 aatcaaactcttaagaatatcttcaggcgatctcagcaacgt 26617535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 28276925 - 28276978
Alignment:
Q  81 aatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacat 134  Q
    |||||||||||| ||||||||||||||| ||| |||||||||  ||||||||||    
T  28276925 aatatcttcaggagatctcagcaacgtaactttcatctcaattatcggaaacat 28276978  T

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Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 31931808 - 31931689
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttcca 115  Q
    |||||||||||||||| ||||| | | |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  31931808 ataaagacactacataataatggtgccacataaacataatcatgtggcagaatcaaattcttcagaatatcttcaggcgatctcagcaacgtaacttcca 31931709  T
Q  116 tctcaatcctcggaaacatg 135  Q
    ||||||||||||| ||||||    
T  31931708 tctcaatcctcgggaacatg 31931689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 306
Target Start/End: Complemental strand, 11924402 - 11924276
Alignment:
Q  178 taatcaagagcttggattctacatctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataata 277  Q
    ||||||||||||| ||| |||| ||||||||||| |||||||||||||||| |  |||| | |||||| ||||||| |||||||||||||||||||||||    
T  11924402 taatcaagagcttagatgctacgtctacattttt-ccaaaacatgcataatataatttt-cataaaaattcgcaacggaagacaatcatcatacataata 11924305  T
Q  278 tctcatcaccaagtaataatcctcaatac 306  Q
    |||||| ||||||||||||||||||||||    
T  11924304 tctcattaccaagtaataatcctcaatac 11924276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 306
Target Start/End: Complemental strand, 12410636 - 12410539
Alignment:
Q  208 tttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcctcaatac 306  Q
    |||||||||||||||||| |||  ||||| | |||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12410636 tttttccaaaacatgcatgatcaagtttt-cataaaaattcgcaacggaagacaatcatcatacataatatatcatcaccaagtaataatcctcaatac 12410539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 20846758 - 20846852
Alignment:
Q  208 tttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcctcaa 303  Q
    ||||||||||||||||||||  ||||||  | |||||| | ||||  ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  20846758 tttttccaaaacatgcataacttggtttc-cataaaaatttgcaatggaagacattcaacatacataatatctcatcaccaagtaataatcctcaa 20846852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 12421929 - 12422050
Alignment:
Q  183 aagagcttggattctacatctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctca 282  Q
    ||||| || |||||||| || |||||| | ||||||||||||||||  ||||||   | |||| ||||||  ||||||| |||||||||| ||||| |||    
T  12421929 aagagtttagattctacgtcaacatttct-ccaaaacatgcataattaggttttaa-tgaaaattcgcaatggaagacagtcatcatacacaatatatca 12422026  T
Q  283 tcaccaagtaataatcctcaatac 306  Q
    ||||||||||||||||||||||||    
T  12422027 tcaccaagtaataatcctcaatac 12422050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 44100676 - 44100607
Alignment:
Q  66 aatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacatg 135  Q
    ||||||| |||| | |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||    
T  44100676 aatcaaattcttgagaatatcttcaggtgatctcagcaatgtagcatccatctcgatcctcggaaacatg 44100607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 17543707 - 17543608
Alignment:
Q  201 tctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcct 300  Q
    ||||||||||||  |||||||||||||||||| ||||| |||||||| ||||| ||||| ||| |||||| |||||||||||||| || | || ||||||    
T  17543707 tctacattttttt-aaaacatgcataatctgg-ttttcataaaaacttgcaaccgaagataat-atcatatataatatctcatcaacatgcaacaatcct 17543611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 12227468 - 12227562
Alignment:
Q  33 taatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcg 127  Q
    |||| ||| ||| ||||||||||||| | |||||||||||||| | | |||||  ||| || ||||||||||| |||| |||||||| |||||||    
T  12227468 taataatattacctaaacataatcatctagcataatcaaactcatgaaaatatactcaagcaatctcagcaacatagcatccatctcgatcctcg 12227562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 24075319 - 24075229
Alignment:
Q  33 taatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatc 123  Q
    ||||||| |||| ||||||||||  | || |||||||||| | || | |||||||||| ||||||||||||| |||||||| | |||||||    
T  24075319 taatgattctacctaaacataattttctgacataatcaaaatgttgagaatatcttcaagcgatctcagcaatgtagcttcaaactcaatc 24075229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 20759098 - 20759198
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||| ||  |||||||||||| ||| ||||||| | |||   ||||||| | || | |||||||||||||||| |||||||||    
T  20759098 tccaacaaaataaagacactagattataatgatactacctaatcataatcttctggtggaatcaaattgttgagaatatcttcaggcgatatcagcaacg 20759197  T
Q  107 t 107  Q
    |    
T  20759198 t 20759198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 20765489 - 20765589
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||| ||  |||||||||||| ||| ||||||| | |||   ||||||| | || | |||||||||||||||| |||||||||    
T  20765489 tccaacaaaataaagacactagattataatgatactacctaatcataatcttctggtggaatcaaattgttgagaatatcttcaggcgatatcagcaacg 20765588  T
Q  107 t 107  Q
    |    
T  20765589 t 20765589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 25144715 - 25144660
Alignment:
Q  81 aatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacatgc 136  Q
    ||||||||  ||||||||||||||||||||||||| |||||||  ||| |||||||    
T  25144715 aatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgggaacatgc 25144660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 24629888 - 24630015
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||| ||||||| |||| ||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||||     
T  24629888 tccaacaaaataaagacactacataataatgatgctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcaggcgatctcagcaaca 24629987  T
Q  107 tagcttccatctcaatcctcggaaacat 134  Q
    |||||||| ||||||||||||| |||||    
T  24629988 tagcttccgtctcaatcctcgggaacat 24630015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 27783694 - 27783565
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactctt-cataatatcttcaggcgatctcagcaac 105  Q
    ||||| || |||||||||||||||| ||||||| |||| ||||||||||| |||| || ||||||||||||  | |||||||||| ||||||||||||||    
T  27783694 tccaacaaaataaagacactacataataatgatgctacctaaacataatcttgtgacagaatcaaactcttaaagaatatcttca-gcgatctcagcaac 27783596  T
Q  106 gtagcttccatctcaatcctcggaaacatgc 136  Q
    |||| ||||||||||||||| || |||||||    
T  27783595 gtagattccatctcaatccttgggaacatgc 27783565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 10204819 - 10204709
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||  ||||||| |||| ||||||||||  | ||||| ||||||| | || | ||||||||||||||||||||||||||    
T  10204819 tccaacaaaataaagacactacatcataatgatgctacctaaacataatttt-tggcagaatcaaattgtttagaatatcttcaggcgatctcagcaacg 10204721  T
Q  107 tagcttccatct 118  Q
    ||||||||||||    
T  10204720 tagcttccatct 10204709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 23354755 - 23354634
Alignment:
Q  181 tcaagagcttggattctacatctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatct 280  Q
    ||||||| || ||| |||| ||||||||||||| |||||||||||||  ||||||| | |||||| | ||| | ||||||||||  ||||||| ||| ||    
T  23354755 tcaagagtttagatgctacgtctacattttttc-aaaacatgcataacttggttttccataaaaatttgcagcggaagacaatctacatacatgataact 23354657  T
Q  281 catcaccaagtaataatcctcaa 303  Q
    |||||||||||||||||| ||||    
T  23354656 catcaccaagtaataatcttcaa 23354634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 26140398 - 26140297
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||| ||| |||||| ||||||| |||| ||||||||||  | ||  | |||||||||||| | |||||||||||||||||||| |||||    
T  26140398 tccaacaaaataaatacaatacataataatgatgctacctaaacataattttttgaaagaatcaaactcttaagaatatcttcaggcgatctcaacaacg 26140299  T
Q  107 ta 108  Q
    ||    
T  26140298 ta 26140297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 24062718 - 24062674
Alignment:
Q  137 agtgtaacaccataaaccacatatgcaataaatcatgcaattaat 181  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||    
T  24062718 agtgtaacaccctaaaccccatatgcaataaatcatggaattaat 24062674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 8751953 - 8751887
Alignment:
Q  60 tggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcgg 128  Q
    ||||||||||||||| || | |||||||  |  |||||||| ||||||| |||||||||||||||||||    
T  8751953 tggcataatcaaactgttgaaaatatct--attcgatctcaacaacgtaacttccatctcaatcctcgg 8751887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 22843333 - 22843402
Alignment:
Q  66 aatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacatg 135  Q
    |||||||||||| | |||| |||||||||||||||  |||  ||| |||||||| ||| |||||||||||    
T  22843333 aatcaaactcttgagaataacttcaggcgatctcaaaaacaaagcatccatctcgatcgtcggaaacatg 22843402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 14095875 - 14095756
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttcca 115  Q
    ||||||||| |||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||| ||||||||    
T  14095875 ataaagacattacataataatgatgctacctaaacataatcttgtggcataatcaaactcttgagaatatctacaggcgatctcagcaacgaagcttcca 14095776  T
Q  116 tctcaatcctcggaaacatg 135  Q
    ||||||||||||| ||||||    
T  14095775 tctcaatcctcgggaacatg 14095756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 5973004 - 5973121
Alignment:
Q  19 aagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatct 118  Q
    ||||||||||||| ||||||| |||| ||||||||||| | ||| | |||||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  5973004 aagacactacataataatgatgctacctaaacataatcttatggtagaatcaaactcttgagaatatcttcaggcgatctcagcaatgtagcttccatct 5973103  T
Q  119 caatcctcggaaacatgc 136  Q
    |||||||||| |||||||    
T  5973104 caatcctcgggaacatgc 5973121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 8711118 - 8711001
Alignment:
Q  19 aagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatct 118  Q
    ||||||||||||| ||||||| |||| ||||||||||| | ||| | |||||||||||| | |||||||| |||| |||||||||| |||||||||||||    
T  8711118 aagacactacataataatgatgctacctaaacataatcttatggtagaatcaaactcttgagaatatctttaggcaatctcagcaatgtagcttccatct 8711019  T
Q  119 caatcctcggaaacatgc 136  Q
    |||||||||| |||||||    
T  8711018 caatcctcgggaacatgc 8711001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 20244378 - 20244288
Alignment:
Q  41 ctacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaa 131  Q
    |||||||||||||||| ||||||| |||||||| ||||||||| | |||| ||||||| ||||||||| | ||||||||||||||||||||    
T  20244378 ctacataaacataatcttgtggcagaatcaaacgcttcataatttattcaagcgatcttagcaacgtatcatccatctcaatcctcggaaa 20244288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 22138362 - 22138272
Alignment:
Q  41 ctacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaa 131  Q
    |||||||||||||||| ||||||| |||||||| ||||||||| | |||| ||||||| ||||||||| | ||||||||||||||||||||    
T  22138362 ctacataaacataatcttgtggcagaatcaaacgcttcataatttattcaagcgatcttagcaacgtatcatccatctcaatcctcggaaa 22138272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 23090994 - 23090931
Alignment:
Q  240 taaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcctcaa 303  Q
    |||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  23090994 taaaaattcgcaacagaagacaatcaacatatataatatctcatcaccaagtaataatcctcaa 23090931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 24560059 - 24559940
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||||||||| |||| ||||||| |||| ||||| ||||| ||||| | |||  ||||||| ||||||||||| |||||||  |||||||    
T  24560059 tccaacaaaataaagacactgcataataatgatgctacctaaacttaatcttgtggaagaatggaactcttgataatatcttcgggcgatcatagcaacg 24559960  T
Q  107 tagcttccatctcaatcctc 126  Q
    |||| | |||||||||||||    
T  24559959 tagcattcatctcaatcctc 24559940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 5571379 - 5571298
Alignment:
Q  41 ctacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaat 122  Q
    |||| ||||||||||| ||||||| |||||||||||| | ||| ||||||| ||||||||||||| |||||| |||||||||    
T  5571379 ctacctaaacataatcttgtggcagaatcaaactctttagaatgtcttcagtcgatctcagcaacatagctttcatctcaat 5571298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 3097475 - 3097583
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||||||  |||||| ||||||| |||| ||||||||||  | | ||| ||||||||| || | |||||||||||||||||||||||||     
T  3097475 tccaacaaaataaagactgtacatattaatgatgctacctaaacataattttctagcagaatcaaactgttgagaatatcttcaggcgatctcagcaaca 3097574  T
Q  107 tagcttcca 115  Q
    |||||||||    
T  3097575 tagcttcca 3097583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 18743938 - 18744036
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaac 105  Q
    |||||||| |||||||||||||||| |||||||  ||||||| ||||||| | |||   ||||||||| |  | ||||||||||| |||||||||||||    
T  18743938 tccaagaaaataaagacactacataataatgatgatacataatcataatcttatggaggaatcaaactgtcgagaatatcttcagacgatctcagcaac 18744036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 19243038 - 19242924
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||||||| |||||| |||||||||    ||||||||||||| ||||||||| ||| | || | ||||||||  ||  |||||| ||| |    
T  19243038 tccaacaaaataaagacaatacataataatgatacc---taaacataatcatctggcataattaaagttttgagaatatcttatggtaatctcaacaatg 19242942  T
Q  107 tagcttccatctcaatcc 124  Q
    |||| |||||||||||||    
T  19242941 tagcatccatctcaatcc 19242924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 23607969 - 23608021
Alignment:
Q  66 aatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatct 118  Q
    |||||||||||| | |||||||||||| |||||| |||||| ||| |||||||    
T  23607969 aatcaaactcttgagaatatcttcaggtgatctctgcaacgaagcatccatct 23608021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 7066903 - 7066774
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||| ||||||| |||| ||||||||||| ||||||| |||||| ||||| | ||||| ||||||||||||||||||||    
T  7066903 tccaacaaaataaagacactacataataatgatgctacctaaacataatcttgtggcagaatcaagctcttaagaatatattcaggcgatctcagcaacg 7066804  T
Q  107 tagcttccatctcaatcctcggaaacatgc 136  Q
    |||||||||||||||||||| | |||||||    
T  7066803 tagcttccatctcaatcctcaggaacatgc 7066774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 12309566 - 12309695
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||||||| |||||| ||||||| |||| ||||||||||| ||||||| |||||||||||| | |||||||||| ||||||||||||||     
T  12309566 tccaacaaaataaagacaatacataataatgatgctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcatgcgatctcagcaacc 12309665  T
Q  107 tagcttccatctcaatcctcggaaacatgc 136  Q
    | |||||||||||||||||||| |||||||    
T  12309666 tggcttccatctcaatcctcgggaacatgc 12309695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 16886467 - 16886593
Alignment:
Q  10 aagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtag 109  Q
    ||||| ||||||||| |||||| ||||||| |||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| || | ||| ||||    
T  16886467 aagaaaataaagacagtacataataatgatgctacctaaacataatcttgtggcatgatcaaactctttataatatcttcaggcgaacttaacaatgtag 16886566  T
Q  110 cttccatctcaatcctcggaaacatgc 136  Q
    | |||| |||||||||| | |||||||    
T  16886567 catccagctcaatcctcaggaacatgc 16886593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 6462101 - 6462006
Alignment:
Q  207 ttttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcctcaa 303  Q
    |||||||||||||||||||||  ||||||  | |||||| | ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  6462101 ttttttccaaaacatgcataacttggtttc-cataaaaatttgcaacggaagacattcaacatacataatatctcatcaccaagtaataatcctcaa 6462006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 22522858 - 22522753
Alignment:
Q  196 ctacatctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaata 295  Q
    |||||||||||||||| |||||||||||||||  |||||| |  |||||  | ||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  22522858 ctacatctacattttt-ccaaaacatgcataacttggtttctt-taaaattttgcaacggaagacattcaacatacataatatctcatcaccaagtaata 22522761  T
Q  296 atcctcaa 303  Q
    ||||||||    
T  22522760 atcctcaa 22522753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 26926721 - 26926614
Alignment:
Q  33 taatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaac 132  Q
    ||||||| | || |||| |||||| ||||||| |||||||||||| | |||||||||||||||||||| ||| | |||||||||||||||||||   |||    
T  26926721 taatgatgcaacctaaatataatcttgtggcagaatcaaactcttgagaatatcttcaggcgatctcatcaatgcagcttccatctcaatcctcaagaac 26926622  T
Q  133 atgcagtg 140  Q
    ||||||||    
T  26926621 atgcagtg 26926614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 13474565 - 13474667
Alignment:
Q  201 tctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatcaccaagtaataatcct 300  Q
    |||| |||||| | |||||||||||||  ||||||| | |||||| | ||||| ||||||||||| ||||||| ||| ||||||| ||||||||||||||    
T  13474565 tctagatttttccaaaaacatgcataacttggttttccataaaaatttgcaacggaagacaatcaacatacatgataactcatcatcaagtaataatcct 13474664  T
Q  301 caa 303  Q
    |||    
T  13474665 caa 13474667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 7414171 - 7414262
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgt 107  Q
    |||||||||||||||| ||||||| |||| ||| ||||||| | ||||  ||||||||| || | ||||| |||||||||||||||||||||    
T  7414171 ataaagacactacataataatgatgctacctaatcataatcttctggcgaaatcaaactgttgagaatattttcaggcgatctcagcaacgt 7414262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 13304240 - 13304336
Alignment:
Q  38 atactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacat 134  Q
    ||||||| |||||||  |||| ||||  |||||||||||| |||||||||||||||||||||| ||||| ||| ||||| || ||| |||| |||||    
T  13304240 atactacctaaacatcttcatctggccgaatcaaactcttgataatatcttcaggcgatctcatcaacgaagcatccatttcgatcgtcgggaacat 13304336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 12083168 - 12083080
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaa 104  Q
    |||||||||||||||| ||||||| |||| ||| ||||||| |  |||  || |||||| || | ||||||||||||||||||||||||    
T  12083168 ataaagacactacataataatgatgctacctaatcataatcttcaggcggaaccaaactgttgagaatatcttcaggcgatctcagcaa 12083080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 23553594 - 23553540
Alignment:
Q  81 aatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacatg 135  Q
    |||||||||||| ||||||| ||||||||  |||||||||||||||| |||||||    
T  23553594 aatatcttcaggtgatctcaacaacgtagtatccatctcaatcctcgaaaacatg 23553540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 27317781 - 27317887
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgt------ggcataatcaaactcttcataatatcttcaggcgatctca 100  Q
    ||||| || |||||||||||||||| ||||||| |||| ||||||||||| | |      |||| ||||||||| || | || |||||| ||||||||||    
T  27317781 tccaacaaaataaagacactacataataatgatgctacctaaacataatcttctggtttcggcagaatcaaactattgagaagatcttccggcgatctca 27317880  T
Q  101 gcaacgt 107  Q
    |||||||    
T  27317881 gcaacgt 27317887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 31267313 - 31267223
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgt 107  Q
    |||||||||||||||| ||||||| | || ||| ||||||| | | ||  ||||||||| || | |||||||||||||||||| ||||||||    
T  31267313 ataaagacactacataataatgatgccacctaatcataatcttctagctgaatcaaactgtt-agaatatcttcaggcgatcttagcaacgt 31267223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 10976053 - 10975924
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||| |||||||  ||||||||||||||| ||||||| |||||||||||| | ||||| ||||| |||||||||||||     
T  10976053 tccaacaaaataaagacactacataataatgatgttacataaacataatcttgtggcagaatcaaactcttgagaatatattcagacgatctcagcaaca 10975954  T
Q  107 tagcttccatctcaatcctcggaaacatgc 136  Q
    |||||||||||||||||||||| |||||||    
T  10975953 tagcttccatctcaatcctcgggaacatgc 10975924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 28718309 - 28718192
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||| |||||||||| ||||||| |||| ||||||||||  | ||||||||||||||| || | ||||||||||||||||||   ||| |    
T  28718309 tccaacaaaataaaaacactacataataatgatgctacctaaacataattttctggcataatcaaactgttgagaatatcttcaggcgatct---caatg 28718213  T
Q  107 tagcttccatctcaatcctcg 127  Q
    |||||||||||||||||||||    
T  28718212 tagcttccatctcaatcctcg 28718192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 16418085 - 16418192
Alignment:
Q  28 catagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcg 127  Q
    |||| ||||||| || | ||||||||||| | ||||| | |||||||||| | |||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  16418085 cataataatgatgctccctaaacataatcttctggcagagtcaaactcttgagaatatcttcaggtgatctcagcaatgtaacatccatctcaatcctcg 16418184  T
Q  128 gaaacatg 135  Q
    | ||||||    
T  16418185 ggaacatg 16418192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 21294041 - 21293958
Alignment:
Q  35 atgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctca 120  Q
    ||||| |||| ||||||||||  | ||||| |||||||||  | | ||||||||||| ||||||||||||||||||||||||||||    
T  21294041 atgatgctacctaaacataattttctggcagaatcaaact--tgagaatatcttcagacgatctcagcaacgtagcttccatctca 21293958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 19748310 - 19748209
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||||||| |||||| ||||||  |||| ||| ||||||| | ||||  ||||||| | || | ||||||||||||||||||||||||||    
T  19748310 tccaacaaaataaagacaatacataataatgacgctacctaatcataatcttatggcggaatcaaattgttgagaatatcttcaggcgatctcagcaacg 19748211  T
Q  107 ta 108  Q
    ||    
T  19748210 ta 19748209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 37396897 - 37396844
Alignment:
Q  66 aatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctc 119  Q
    |||||||||||| | |||||||||||| ||||||||||||||||| ||||||||    
T  37396897 aatcaaactcttgagaatatcttcaggtgatctcagcaacgtagcatccatctc 37396844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 34595476 - 34595421
Alignment:
Q  81 aatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacatgc 136  Q
    |||||||||||||||||||||||||| | | |||||||||||||| | ||||||||    
T  34595476 aatatcttcaggcgatctcagcaacgcaacatccatctcaatccttgaaaacatgc 34595421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 15798053 - 15798144
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgt 107  Q
    ||||||||| |||||| ||| ||| |||| ||| ||||||| | ||||  ||||||||| || | ||||||||||||| |||||| ||||||    
T  15798053 ataaagacaatacataataacgatgctacctaatcataatcttttggcggaatcaaactgttgagaatatcttcaggcaatctcatcaacgt 15798144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 31488217 - 31488140
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggc 93  Q
    ||||||||| || ||| |||| || |||| ||||||||||| | ||| | |||||||||||| | |||||||||||||    
T  31488217 ataaagacattaaataataatcatgctacctaaacataatcttctggtagaatcaaactcttaagaatatcttcaggc 31488140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 23228634 - 23228734
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||| |||| || |||| ||| ||||||  | | ||  ||||||||| |||| |||||||||| | ||||||| |||||    
T  23228634 tccaacaaaataaagacactacatattaataatgctacctaatcataattttctagcggaatcaaactgttcagaatatcttcaagtgatctcaacaacg 23228733  T
Q  107 t 107  Q
    |    
T  23228734 t 23228734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 34179292 - 34179211
Alignment:
Q  200 atctacattttttccaaaacatgcataatctggtttttcctaaaaactcgcaacagaagacaatcatcatacataatatctcatc 284  Q
    |||||||||||||| |||||||||||||||| | ||||| |||||  | ||||| |||| |||| |||||| |||||||||||||    
T  34179292 atctacattttttc-aaaacatgcataatcttg-ttttcataaaattttgcaacggaagtcaat-atcatatataatatctcatc 34179211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 21760350 - 21760478
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||| ||||||| |||| |||||||||| || ||| | ||||||||| || | ||||||||||| |||||||| |||||    
T  21760350 tccaataaaataaagacactacataataatgatgctacctaaacataattatatggtagaatcaaactgttgagaatatcttcagacgatctcatcaacg 21760449  T
Q  107 tagcttccatctcaatcctcggaaacatg 135  Q
    | | |||||||||||||||||| ||||||    
T  21760450 tggtttccatctcaatcctcgggaacatg 21760478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 26793534 - 26793432
Alignment:
Q  33 taatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaac 132  Q
    |||| |||||||||||||||  |||| ||||  |||||||||||| | ||||||||| |||||||||||||| ||||  |||||||| |||||||| |||    
T  26793534 taataatactacataaacatcttcatttggccgaatcaaactcttgagaatatcttctggcgatctcagcaatgtagaatccatctcgatcctcgggaac 26793435  T
Q  133 atg 135  Q
    |||    
T  26793434 atg 26793432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 15471718 - 15471671
Alignment:
Q  60 tggcataatcaaactcttcataatatcttcaggcgatctcagcaacgt 107  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  15471718 tggcataatcaaactcttgagaatatcttcaggcgatctcagcaacgt 15471671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 27799851 - 27799782
Alignment:
Q  66 aatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacatg 135  Q
    |||||||||||| | |||||||||||| |||  |||||||||||| |||||||| |||| ||||||||||    
T  27799851 aatcaaactcttgagaatatcttcaggagattccagcaacgtagcatccatctcgatccacggaaacatg 27799782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 19262375 - 19262475
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||| ||||||| |||| ||| ||||||| |  |||  ||||||||| || | |||||||||||  |||||||||||||    
T  19262375 tccaacaaaataaagacactacataataatgatgctacctaatcataatcttcaggcggaatcaaactgttgagaatatcttcagttgatctcagcaacg 19262474  T
Q  107 t 107  Q
    |    
T  19262475 t 19262475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 11789165 - 11789227
Alignment:
Q  60 tggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaat 122  Q
    ||||| ||||||||| || | |||||||||||||||||||| |||||| |||| |||||||||    
T  11789165 tggcagaatcaaactgtttagaatatcttcaggcgatctcaacaacgtggcttgcatctcaat 11789227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 48706930 - 48706972
Alignment:
Q  66 aatcaaactcttcataatatcttcaggcgatctcagcaacgta 108  Q
    |||||||||||| | ||||||||||| ||||||||||||||||    
T  48706930 aatcaaactcttgagaatatcttcagacgatctcagcaacgta 48706972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 55390749 - 55390860
Alignment:
Q  16 ataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttcca 115  Q
    |||||||||||||||| || |||| |||  ||||||||||| ||||||||||||||||| || | |||||||||||| ||| ||| ||| ||||| ||||    
T  55390749 ataaagacactacataatattgatgctatctaaacataatcttgtggcataatcaaacttttgagaatatcttcaggtgatatcaacaatgtagcatcca 55390848  T
Q  116 tctcaatcctcg 127  Q
    ||||||||||||    
T  55390849 tctcaatcctcg 55390860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 20409753 - 20409855
Alignment:
Q  33 taatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaac 132  Q
    |||| ||||||| ||||| ||||||| |||||||||||||||||| | |||||||| ||||||||||| ||| ||||| || |||||||||||||| |||    
T  20409753 taataatactacctaaacttaatcatctggcataatcaaactcttgaaaatatcttaaggcgatctcaacaatgtagcatcgatctcaatcctcgggaac 20409852  T
Q  133 atg 135  Q
    |||    
T  20409853 atg 20409855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 17371052 - 17370923
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || |||||||||||||||| |||| || |||| || |||||||| ||||| | |||||||||||| | ||||||||||||||| |||| |||||    
T  17371052 tccaacaaaataaagacactacataataattatgctacctatacataatcttgtggaagaatcaaactcttgagaatatcttcaggcgacctcaacaacg 17370953  T
Q  107 tagcttccatctcaatcctcggaaacatgc 136  Q
    | ||  ||||||||||| |||| |||||||    
T  17370952 ttgcaaccatctcaatcatcgggaacatgc 17370923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 1638569 - 1638698
Alignment:
Q  7 tccaagaatataaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacg 106  Q
    ||||| || ||||||||||||| || |||| || |||| ||||||||||  | ||||| || ||||||||| | ||||||| |||| ||||| ||||| |    
T  1638569 tccaacaaaataaagacactacgtaataataatgctacctaaacataattttatggcagaaacaaactcttaagaatatctccaggtgatctgagcaatg 1638668  T
Q  107 tagcttccatctcaatcctcggaaacatgc 136  Q
    || ||||||||||||||||||| |||||||    
T  1638669 tatcttccatctcaatcctcgggaacatgc 1638698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 50342620 - 50342696
Alignment:
Q  46 taaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaat 122  Q
    ||||||||||  | ||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  50342620 taaacataattttatggcataatcaaaccgttcataatatcttcaggcgatcttagcaacgtagcttccaactcaat 50342696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 17384752 - 17384800
Alignment:
Q  255 gaagacaatcatcatacataatatctcatcaccaagtaataatcctcaa 303  Q
    ||||||||| | |||| |||| |||||||||||||||||||||||||||    
T  17384752 gaagacaattaacatatataaaatctcatcaccaagtaataatcctcaa 17384800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 17267309 - 17267384
Alignment:
Q  60 tggcataatcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctcaatcctcggaaacatg 135  Q
    ||||| |||||||||||| | |||||||| |||| |||||||||||||| ||| ||| || |||| ||| ||||||    
T  17267309 tggcagaatcaaactcttgagaatatctttaggcaatctcagcaacgtaacttacatatcgatccacgggaacatg 17267384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 29634931 - 29634982
Alignment:
Q  68 tcaaactcttcataatatcttcaggcgatctcagcaacgtagcttccatctc 119  Q
    |||||||||| | |||||||||||||||||||||||||| ||| || |||||    
T  29634931 tcaaactcttgagaatatcttcaggcgatctcagcaacggagcatctatctc 29634982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 5584 - 5495
Alignment:
Q  18 aaagacactacatagtaatgatactacataaacataatcatgtggcataatcaaactcttcataatatcttcaggcgatctcagcaacgt 107  Q
    |||||||||||||| ||||||| |||| ||| |   ||| | ||||  ||||||||| || | |||||||||||||||||||| ||||||    
T  5584 aaagacactacataataatgatgctacctaatctcgatcttctggcgaaatcaaactgttgagaatatcttcaggcgatctcaacaacgt 5495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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