View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16103_high_1_N (Length: 500)
Name: NF16103_high_1_N
Description: NF16103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16103_high_1_N |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 31097894 - 31097410
Alignment:
| Q |
17 |
atggcccattatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgaga |
116 |
Q |
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| T |
31097894 |
atggcccattatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgaga |
31097795 |
T |
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| Q |
117 |
atgcgagacggattggttggggtagaggtagtggtggctgtg--agcttacaatgagaatgttacgttgttaagctttctccagttgatgcctttacaaa |
214 |
Q |
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| T |
31097794 |
atgcgagacggattggtcggggtagaggtagtggtggctatagcagcg-ataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaa |
31097696 |
T |
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| Q |
215 |
gtaaatccacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatagtaatgatatttttatc |
314 |
Q |
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| T |
31097695 |
gtaaatccacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatagtaatgatatttttatc |
31097596 |
T |
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| Q |
315 |
aagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagnnnnnnnnacttattctcaatctttatccctttagagtt |
414 |
Q |
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| T |
31097595 |
aagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagttttttttacttattctcaatctttatccctttagagtt |
31097496 |
T |
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| Q |
415 |
ctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaac |
500 |
Q |
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| T |
31097495 |
ctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaac |
31097410 |
T |
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