View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16103_high_6 (Length: 355)
Name: NF16103_high_6
Description: NF16103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16103_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 169 - 354
Target Start/End: Original strand, 53012860 - 53013045
Alignment:
| Q |
169 |
catttgcttcttaaaagcatggtttcgggttggaattcgtacgaaaatgtttaaactaacaatatcgatatttatcgatttgagttaagttttatgaaca |
268 |
Q |
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| T |
53012860 |
catttgcttcttaaaagcatggtttcaggttggaattcgtacgaaaatgtttaaactaacaatatcgatatttatcggtttgagttaagttttatgaaca |
53012959 |
T |
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| Q |
269 |
aatataaagagtgaatgctatactgtaaaattatagatagcaatattttcaaccgtaacaatcattacaagattttgttattagtg |
354 |
Q |
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| T |
53012960 |
aatataaagagtgaatgttgtactgtaaaattatagatagcaatattttcaaccgtaacaatcattacaagattttgttattagtg |
53013045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 53012711 - 53012828
Alignment:
| Q |
14 |
atatatcactaccaagtgtacatgttcaaatctctatttgtggcacatataatataattgaacgttttcacaaaacttgttttacacaaacaaattaaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53012711 |
atatatcactaccaagtgtacatgttcaaatctctatttgtggcacatataatataattgaacgttttcacaaaacttgttttacacaaacaaattaaat |
53012810 |
T |
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| Q |
114 |
tcttagtttgatatttac |
131 |
Q |
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| T |
53012811 |
tcttagtttgatatttac |
53012828 |
T |
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