View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16103_high_7 (Length: 353)

Name: NF16103_high_7
Description: NF16103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16103_high_7
NF16103_high_7
[»] chr4 (1 HSPs)
chr4 (33-353)||(55861129-55861451)
[»] chr5 (1 HSPs)
chr5 (13-152)||(3820888-3821027)
[»] chr1 (1 HSPs)
chr1 (34-353)||(16699882-16700203)
[»] chr2 (1 HSPs)
chr2 (33-353)||(29273127-29273427)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 33 - 353
Target Start/End: Original strand, 55861129 - 55861451
Alignment:
Q  33 ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga 132  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||   |||||||||||| |||||||||||||||||    
T  55861129 ccaccaacaacaaaacaaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatataaccccaccacaaagaaattatggacccga 55861228  T
Q  133 attgaagtaccgccggaaa-ttgttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcga 231  Q
    ||||||| ||  | ||||| || |||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||| ||||||||||    
T  55861229 attgaaggacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcga 55861328  T
Q  232 gaaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaac-aaccatggaagagttggatc 330  Q
     |||  |||||||||||||||||||| ||||||||| |||  |||| | | |||| ||||||||||||||||  | |||   ||||  | ||||||||||    
T  55861329 aaaagtcatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatc 55861428  T
Q  331 tagcgcaaataacccctcctaca 353  Q
    ||||||||| |||||||||||||    
T  55861429 tagcgcaaacaacccctcctaca 55861451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 3821027 - 3820888
Alignment:
Q  13 aatatcacgacaatcaggcaccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccacca 112  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  3821027 aatatcaccacaatcagacaccaccagcaacaaaataaaactgcaatcaacaaaagaagacaaaatccatataaaatgaaaggtaaaaccaaccccacca 3820928  T
Q  113 cagagaaattatggacccgaattgaagtaccgccggaaat 152  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  3820927 cagagaaattatggacccgaattgaagtaccgcccgaaat 3820888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 34 - 353
Target Start/End: Complemental strand, 16700203 - 16699882
Alignment:
Q  34 caccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccgaa 133  Q
    ||||| |||||||| ||||||||||||| |||| || ||||||||||  |||||||||||||  || |||||||||||| ||||||||||| | ||||||    
T  16700203 caccaacaacaaaacaaaactgcaatcagcaaaagatgacaaaaccctaataaaatgaaaggctaatccaaccccaccatagagaaattattgtcccgaa 16700104  T
Q  134 ttgaagtaccgccggaaattgttcaagtaacggccccattatttgacaaatccaactacaatctctg--caaaatccgtattaacatcgcgaacgcgcga 231  Q
    | ||||||||| |||||||| |||||||| ||| |||||||  ||||||||||||||||||||  ||  || |||| |||||||||||| ||||||||||    
T  16700103 tcgaagtaccgtcggaaatttttcaagtatcggtcccattacctgacaaatccaactacaatccatgcacacaatctgtattaacatcgggaacgcgcga 16700004  T
Q  232 gaaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaacaaccatggaagagttggatct 331  Q
     ||| |||| ||   |||||||||||  | |||||| |||  |||||| | || ||||||||||| || |||| ||| || ||||||  |||||||||||    
T  16700003 aaaagccatccagcaaagtcttcttgaggtagcttttgaattataatacacaatccgacataaattcctaaatcaaaccacccatggtggagttggatct 16699904  T
Q  332 agcgcaaataacccctcctaca 353  Q
    ||||||||| ||||||||||||    
T  16699903 agcgcaaatcacccctcctaca 16699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 33 - 353
Target Start/End: Complemental strand, 29273427 - 29273127
Alignment:
Q  33 ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga 132  Q
    |||||| ||||||||  ||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |||||||||||| |||||||||||||||||    
T  29273427 ccaccaacaacaaaacgaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatctaaccccaccacaaagaaattatggacccga 29273328  T
Q  133 attgaagtaccgccggaaattgttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcgag 232  Q
    |||                     |||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||| ||||||||||     
T  29273327 att---------------------caagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcgaa 29273249  T
Q  233 aaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaac-aaccatggaagagttggatct 331  Q
    ||| ||||||||||||||||||||| ||||||||| |||  |||| | | |||| ||||||||||||||||  | |||   ||||  | |||||||||||    
T  29273248 aaagccatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatct 29273149  T
Q  332 agcgcaaataacccctcctaca 353  Q
    |||||||| |||||||||||||    
T  29273148 agcgcaaacaacccctcctaca 29273127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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