View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16104_high_11 (Length: 286)
Name: NF16104_high_11
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 13692920 - 13692799
Alignment:
| Q |
12 |
atgaataaacagttatgagtgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaa |
111 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13692920 |
atgaataaacagttatcaatgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaa |
13692821 |
T |
|
| Q |
112 |
gatcagacagtgagctacatgg |
133 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
13692820 |
gatcagacagtgagctacatgg |
13692799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 13686448 - 13686346
Alignment:
| Q |
23 |
gttatgagtgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaagatcagacagt |
122 |
Q |
| |
|
||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
13686448 |
gttattagtgttatctttactcctttctctattaaacgttttgagaattgaatcatagggttcatgtggccttgtgctggataaggtaagatgagacagt |
13686349 |
T |
|
| Q |
123 |
gag |
125 |
Q |
| |
|
||| |
|
|
| T |
13686348 |
gag |
13686346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 13673473 - 13673575
Alignment:
| Q |
29 |
agtgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaagatcagacagtgagcta |
128 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
13673473 |
agtgtaacttttactcctttatggatcaaacgttttgagaattgaatcataggattcatgtgaccttgacctggaaaaggtaagatcagacagtgagcta |
13673572 |
T |
|
| Q |
129 |
cat |
131 |
Q |
| |
|
||| |
|
|
| T |
13673573 |
cat |
13673575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 13692759 - 13692679
Alignment:
| Q |
173 |
ttcctaacaaaatacatctatgcactttagttacatatacatatacctacggaaaccaaacaattgtgcttggacatagtg |
253 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| | | ||| |||||||||| ||||||||| |||| |
|
|
| T |
13692759 |
ttcctaataaaatacatctatgtactttagttacatatacatatacatccacaaaacaaacaattgcgcttggacacagtg |
13692679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University