View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16104_high_12 (Length: 285)

Name: NF16104_high_12
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16104_high_12
NF16104_high_12
[»] chr1 (20 HSPs)
chr1 (1-170)||(51453870-51454022)
chr1 (173-277)||(44112679-44112783)
chr1 (173-277)||(45427739-45427843)
chr1 (173-277)||(41065155-41065259)
chr1 (173-277)||(48119630-48119734)
chr1 (173-277)||(35000107-35000211)
chr1 (173-277)||(35003296-35003400)
chr1 (173-277)||(38113189-38113293)
chr1 (173-277)||(38335920-38336024)
chr1 (173-277)||(45705827-45705931)
chr1 (173-277)||(46168385-46168489)
chr1 (173-277)||(45639726-45639830)
chr1 (173-277)||(26585464-26585568)
chr1 (173-228)||(14427349-14427404)
chr1 (173-259)||(43571098-43571184)
chr1 (173-259)||(48498974-48499060)
chr1 (171-259)||(2497574-2497662)
chr1 (173-259)||(5489778-5489864)
chr1 (171-259)||(4401327-4401416)
chr1 (171-259)||(7447826-7447913)
[»] chr8 (22 HSPs)
chr8 (173-277)||(34304790-34304894)
chr8 (173-277)||(35181518-35181622)
chr8 (173-277)||(18066712-18066816)
chr8 (171-277)||(33629987-33630093)
chr8 (173-277)||(16603620-16603724)
chr8 (171-259)||(29800962-29801050)
chr8 (170-258)||(30912575-30912663)
chr8 (173-259)||(42197447-42197533)
chr8 (173-277)||(16358827-16358932)
chr8 (225-277)||(10678146-10678198)
chr8 (171-259)||(20148760-20148848)
chr8 (171-259)||(42295195-42295283)
chr8 (171-259)||(26125635-26125723)
chr8 (171-259)||(42699257-42699345)
chr8 (173-259)||(2546998-2547084)
chr8 (173-259)||(11582768-11582854)
chr8 (173-259)||(29705364-29705450)
chr8 (173-259)||(36743495-36743581)
chr8 (173-257)||(1375544-1375628)
chr8 (179-259)||(31384672-31384752)
chr8 (173-259)||(2165975-2166061)
chr8 (173-259)||(5754905-5754991)
[»] chr3 (22 HSPs)
chr3 (173-277)||(9434126-9434230)
chr3 (173-277)||(34791831-34791935)
chr3 (173-277)||(51757595-51757699)
chr3 (173-277)||(4190259-4190363)
chr3 (173-277)||(10457886-10457990)
chr3 (173-277)||(25996270-25996374)
chr3 (173-276)||(52627972-52628075)
chr3 (173-259)||(40808867-40808953)
chr3 (170-270)||(27748562-27748662)
chr3 (173-259)||(25413683-25413769)
chr3 (173-259)||(42100690-42100776)
chr3 (173-259)||(45126940-45127026)
chr3 (173-271)||(53273684-53273782)
chr3 (173-259)||(24688414-24688500)
chr3 (173-259)||(42394431-42394517)
chr3 (173-259)||(46941055-46941141)
chr3 (173-259)||(54237098-54237184)
chr3 (213-270)||(51249350-51249407)
chr3 (171-259)||(53581870-53581958)
chr3 (173-259)||(36150132-36150218)
chr3 (173-259)||(40480751-40480837)
chr3 (173-259)||(54246160-54246246)
[»] chr2 (24 HSPs)
chr2 (173-277)||(43114559-43114663)
chr2 (170-277)||(11825648-11825755)
chr2 (162-277)||(41281968-41282083)
chr2 (173-277)||(12415454-12415558)
chr2 (173-277)||(12427514-12427618)
chr2 (173-277)||(16803970-16804074)
chr2 (173-277)||(16843252-16843356)
chr2 (173-277)||(18491707-18491811)
chr2 (171-256)||(6518484-6518568)
chr2 (173-277)||(966828-966932)
chr2 (177-277)||(34895735-34895835)
chr2 (171-277)||(4299414-4299520)
chr2 (195-277)||(4451944-4452026)
chr2 (193-277)||(12531657-12531740)
chr2 (173-270)||(34817777-34817874)
chr2 (173-257)||(43335777-43335861)
chr2 (173-259)||(1750416-1750502)
chr2 (173-259)||(4764738-4764824)
chr2 (173-259)||(19047159-19047245)
chr2 (173-259)||(30838634-30838720)
chr2 (171-259)||(43490413-43490501)
chr2 (173-259)||(12302265-12302351)
chr2 (173-259)||(16096749-16096835)
chr2 (209-270)||(13780736-13780797)
[»] chr7 (20 HSPs)
chr7 (173-277)||(40236921-40237025)
chr7 (173-277)||(33384872-33384977)
chr7 (173-277)||(27535225-27535329)
chr7 (173-277)||(31408627-31408731)
chr7 (173-277)||(31513289-31513393)
chr7 (171-259)||(43343636-43343724)
chr7 (171-259)||(44416946-44417034)
chr7 (173-259)||(42972854-42972940)
chr7 (171-270)||(4638200-4638299)
chr7 (171-259)||(10573749-10573837)
chr7 (171-259)||(44326178-44326266)
chr7 (173-259)||(5015397-5015483)
chr7 (173-259)||(35069723-35069809)
chr7 (174-259)||(26898414-26898499)
chr7 (173-259)||(9216304-9216389)
chr7 (173-259)||(24001024-24001110)
chr7 (173-259)||(42538443-42538529)
chr7 (173-256)||(43317445-43317528)
chr7 (173-270)||(24280597-24280694)
chr7 (173-238)||(39998410-39998475)
[»] chr5 (11 HSPs)
chr5 (173-277)||(32473388-32473492)
chr5 (173-277)||(17208076-17208180)
chr5 (173-277)||(30622713-30622816)
chr5 (171-259)||(5256995-5257083)
chr5 (173-259)||(7617135-7617221)
chr5 (173-259)||(22512307-22512393)
chr5 (173-259)||(33801471-33801557)
chr5 (173-259)||(2614661-2614747)
chr5 (173-259)||(18033984-18034070)
chr5 (173-259)||(41334675-41334761)
chr5 (173-243)||(33855071-33855141)
[»] chr4 (31 HSPs)
chr4 (173-277)||(55272370-55272474)
chr4 (173-277)||(17619146-17619250)
chr4 (173-277)||(32728359-32728463)
chr4 (173-277)||(711962-712066)
chr4 (177-277)||(48435573-48435673)
chr4 (171-277)||(38851513-38851619)
chr4 (171-277)||(35037005-35037111)
chr4 (173-277)||(960864-960968)
chr4 (173-277)||(46827700-46827804)
chr4 (171-276)||(3756242-3756346)
chr4 (171-259)||(27893854-27893942)
chr4 (173-251)||(49229684-49229762)
chr4 (171-259)||(43514698-43514786)
chr4 (173-259)||(27864566-27864652)
chr4 (173-270)||(28988475-28988572)
chr4 (207-277)||(19879990-19880060)
chr4 (173-259)||(27550311-27550397)
chr4 (225-277)||(36004110-36004162)
chr4 (173-261)||(48463460-48463548)
chr4 (171-270)||(41327544-41327643)
chr4 (173-259)||(1771278-1771364)
chr4 (173-259)||(23035982-23036068)
chr4 (173-259)||(33703143-33703229)
chr4 (209-259)||(39631139-39631189)
chr4 (173-259)||(55966358-55966444)
chr4 (173-258)||(28982835-28982920)
chr4 (173-270)||(41847973-41848070)
chr4 (171-259)||(31680902-31680990)
chr4 (173-259)||(41878408-41878494)
chr4 (209-259)||(43949813-43949863)
chr4 (173-259)||(45490325-45490411)
[»] scaffold0100 (1 HSPs)
scaffold0100 (173-277)||(35450-35554)
[»] chr6 (16 HSPs)
chr6 (173-277)||(33242405-33242509)
chr6 (171-277)||(27441542-27441648)
chr6 (173-271)||(33253915-33254013)
chr6 (171-259)||(24203999-24204087)
chr6 (173-259)||(7367551-7367637)
chr6 (173-259)||(13743233-13743319)
chr6 (173-259)||(13748733-13748819)
chr6 (173-259)||(26670021-26670107)
chr6 (171-256)||(30735982-30736067)
chr6 (173-277)||(31109216-31109320)
chr6 (173-256)||(7273350-7273433)
chr6 (173-259)||(7292749-7292835)
chr6 (173-259)||(9698345-9698431)
chr6 (173-259)||(26466801-26466887)
chr6 (173-270)||(3213402-3213499)
chr6 (173-270)||(30014345-30014442)
[»] scaffold0003 (1 HSPs)
scaffold0003 (171-277)||(45713-45819)
[»] scaffold0119 (1 HSPs)
scaffold0119 (173-259)||(687-773)
[»] scaffold0385 (1 HSPs)
scaffold0385 (173-259)||(11253-11339)
[»] scaffold0038 (1 HSPs)
scaffold0038 (173-259)||(112657-112743)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 51454022 - 51453870
Alignment:
Q  1 tacttctactgctactgctgaaaatggcgaggtggagaaacctgaacgttgagaatgtttgttacttgtattaggcatcgcatcagcgtggtatagtgta 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                    
T  51454022 tacttctactgctactgctgaaaatggcgaggtggagaaaactgaacgttgagaatgtttgttacttgtattaggcatcgcatc---------------- 51453939  T
Q  101 aggagtggggtccataaaaccgattctaaaatagcaataagtcataacttgctcattaaggttttttccg 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51453938 aggagt-gggtccataaaaccgattctaaaatagcaataagtcataacttgctcattaaggttttttccg 51453870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 44112679 - 44112783
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44112679 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 44112778  T
Q  273 atctc 277  Q
    |||||    
T  44112779 atctc 44112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 45427843 - 45427739
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||| | | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45427843 aaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 45427744  T
Q  273 atctc 277  Q
    |||||    
T  45427743 atctc 45427739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 41065155 - 41065259
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  41065155 aaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctctttc 41065254  T
Q  273 atctc 277  Q
     ||||    
T  41065255 ctctc 41065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 48119630 - 48119734
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  48119630 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 48119729  T
Q  273 atctc 277  Q
    |||||    
T  48119730 atctc 48119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 35000211 - 35000107
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||| || ||||| ||||||||||||||| ||| || |||||||||||||| ||||||||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctttc 35000112  T
Q  273 atctc 277  Q
    |||||    
T  35000111 atctc 35000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 35003296 - 35003400
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  35003296 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctttc 35003395  T
Q  273 atctc 277  Q
    |||||    
T  35003396 atctc 35003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 38113293 - 38113189
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||||  ||||||||||||| ||||||||||||||||| || |||||||    
T  38113293 aaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactctttc 38113194  T
Q  273 atctc 277  Q
    |||||    
T  38113193 atctc 38113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 38335920 - 38336024
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | |||||||||||||  |||||||||   ||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  38335920 aaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 38336019  T
Q  273 atctc 277  Q
    |||||    
T  38336020 atctc 38336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 45705827 - 45705931
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||| ||||||| | ||||||||||||  |||||||||||  ||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||    
T  45705827 aaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 45705926  T
Q  273 atctc 277  Q
    |||||    
T  45705927 atctc 45705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 46168385 - 46168489
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | |||||||||| |  |||||||||||   |||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  46168385 aaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 46168484  T
Q  273 atctc 277  Q
    |||||    
T  46168485 atctc 46168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 45639830 - 45639726
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    |||||||||||||||||   ||||||||||||  |||||||||||  ||| ||||| ||| |||||||||| |||||||||||| |||| ||||||||||    
T  45639830 aaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctctttc 45639731  T
Q  273 atctc 277  Q
    |||||    
T  45639730 atctc 45639726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 26585464 - 26585568
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||| ||||||||  |||||||||||||  ||||||||||  ||||||||| ||| ||||| |||| |||||||| ||| |||| ||||||||||    
T  26585464 aaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctctttc 26585563  T
Q  273 atctc 277  Q
    |||||    
T  26585564 atctc 26585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 14427349 - 14427404
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcatta 228  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  14427349 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 43571184 - 43571098
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 43571098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 48499060 - 48498974
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 48498974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 2497662 - 2497574
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||  |||| ||| |||||||||| |||||||||||||||    
T  2497662 gaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaacca 2497574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 5489778 - 5489864
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 5489864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 4401327 - 4401416
Alignment:
Q  171 gaaaaatgttacatgaaca-tcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||| |||||||||| || |||| || |||||   |||||||||  |||| ||||| || |||||||||| |||||||||||||||    
T  4401327 gaaaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaacca 4401416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 7447826 - 7447913
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||||||| |||| || ||||  | |||||||||  |||| ||||  || |||||| ||| |||||||||||||||    
T  7447826 gaaaaatgttacatgaacatcctttattcctacatcccattgtacac-ccatgtattacagatattttgataagttcatctcacaacca 7447913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 34304790 - 34304894
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34304790 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 34304889  T
Q  273 atctc 277  Q
    |||||    
T  34304890 atctc 34304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 35181518 - 35181622
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35181518 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 35181617  T
Q  273 atctc 277  Q
    |||||    
T  35181618 atctc 35181622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 18066816 - 18066712
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||  ||||||||||   |||| |||||||| ||||| |||||||||||||||||||||| ||||||||||    
T  18066816 aaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 18066717  T
Q  273 atctc 277  Q
    |||||    
T  18066716 atctc 18066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 33630093 - 33629987
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||| ||||| | |||||||||||||   |||||||||   |||||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  33630093 gaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctt 33629994  T
Q  271 tcatctc 277  Q
    |||||||    
T  33629993 tcatctc 33629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 16603724 - 16603620
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||| ||| | |||||||||||||  |||| |||||  |||||||||  ||||||||||||| ||||||||||||||||| || |||||||    
T  16603724 aaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactctttc 16603625  T
Q  273 atctc 277  Q
    |||||    
T  16603624 atctc 16603620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 29801050 - 29800962
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  29801050 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 29800962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 30912663 - 30912575
Alignment:
Q  170 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacc 258  Q
    |||||||||||||||||||| | |||| || ||||| | ||||||||| ||||| |||||||  |||||||||| ||||||||||||||    
T  30912663 ggaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaacc 30912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 42197533 - 42197447
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| |||||| || ||||| | |||| |||||  ||| |||||||| |||||||||| |||||||||||||||    
T  42197533 aaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaacca 42197447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 16358932 - 16358827
Alignment:
Q  173 aaaatgttacat-gaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctcttt 271  Q
    |||||||||||| ||| | | ||||||||||||| ||||||||||   ||||||||| | | |||||| ||| ||||||||||||||||| ||||| |||    
T  16358932 aaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttcttttt 16358833  T
Q  272 catctc 277  Q
    ||||||    
T  16358832 catctc 16358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 10678198 - 10678146
Alignment:
Q  225 attagggacattttggtaatttcatctcacaaccatagtttctctttcatctc 277  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  10678198 attaaggacattttggtaaattcatctcacaaccatactttctctttcatctc 10678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 20148760 - 20148848
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| | |||| |||||||  | ||||||||| ||||  |||||||| |||||||||| |||||||||||||||    
T  20148760 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaacca 20148848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 42295195 - 42295283
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  42295195 gaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaacca 42295283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 26125635 - 26125723
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| | |||| |||||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  26125635 gaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 26125723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 42699257 - 42699345
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||||| | |||| || ||||| | ||||||||| | ||| |||| ||| ||||| |||| |||||||||||||||    
T  42699257 gaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaacca 42699345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 2546998 - 2547084
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| ||||| |||| |||||||||||||||    
T  2546998 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaacca 2547084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 11582768 - 11582854
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 11582854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 29705364 - 29705450
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |  ||||| | |||||||||  |||| |||||||| |||||| ||| |||||||||||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaacca 29705450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 36743581 - 36743495
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 36743495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 1375544 - 1375628
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaac 257  Q
    ||||| ||||||||||| | |||| |||||||| | |||||||||  |||  |||||||| |||||||||| || ||||||||||    
T  1375544 aaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaac 1375628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 31384672 - 31384752
Alignment:
Q  179 ttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||| | |||| || ||||  |||||||||||  |||| |||||| | |||||||||| |||||||||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaacca 31384752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 2166061 - 2165975
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||| ||||||||||| |||||| || ||||| | |||||| ||  |||| ||||| || |||||||||| ||||||||| |||||    
T  2166061 aaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataacca 2165975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 5754905 - 5754991
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | ||||||||   |||  |||||||| |||||||||| |||||||||||||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaacca 5754991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 9434126 - 9434230
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9434126 aaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 9434225  T
Q  273 atctc 277  Q
    |||||    
T  9434226 atctc 9434230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 34791831 - 34791935
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  34791831 aaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctttc 34791930  T
Q  273 atctc 277  Q
    |||||    
T  34791931 atctc 34791935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 51757595 - 51757699
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||| |||||| |||| | ||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  51757595 aaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctttc 51757694  T
Q  273 atctc 277  Q
    |||||    
T  51757695 atctc 51757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 4190363 - 4190259
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| | ||| ||||| || |||||||||| ||||||||||||||||| ||||||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctttc 4190264  T
Q  273 atctc 277  Q
    |||||    
T  4190263 atctc 4190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 10457990 - 10457886
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| || |||||||||||||| ||||||||||    
T  10457990 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctttc 10457891  T
Q  273 atctc 277  Q
    |||||    
T  10457890 atctc 10457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 25996270 - 25996374
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||   ||||||||||  |||  |||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  25996270 aaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctctttc 25996369  T
Q  273 atctc 277  Q
    |||||    
T  25996370 atctc 25996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 52628075 - 52627972
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    |||||||||| |||||| | ||||||||||||  ||||||||||| |||||||||| | | |||||||||| |||||||||||| |||| ||||||||||    
T  52628075 aaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctttc 52627976  T
Q  273 atct 276  Q
    ||||    
T  52627975 atct 52627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 40808867 - 40808953
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||| |||| |||||| || ||||| | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 40808953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 27748562 - 27748662
Alignment:
Q  170 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctct 269  Q
    |||||||||||||||||||| | |||| ||||||||   ||| ||||| | ||| |||||||| |||||||||| ||||||||||||| ||| ||| |||    
T  27748562 ggaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatactttatct 27748661  T
Q  270 t 270  Q
    |    
T  27748662 t 27748662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 25413683 - 25413769
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||| | ||||||||| | ||| |||||||| ||||| |||| |||||||||||||||    
T  25413683 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaacca 25413769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 42100690 - 42100776
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 42100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 45127026 - 45126940
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||| |||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 45126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 53273782 - 53273684
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctcttt 271  Q
    ||||||||| |||||||||||||| || || ||   ||||||||   |||| |||||||| |||||||||| ||||||||||||||||| ||| |||||    
T  53273782 aaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatcttt 53273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 24688500 - 24688414
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |  ||||| | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 24688414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 42394517 - 42394431
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 42394431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 46941055 - 46941141
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||    |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 46941141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 54237098 - 54237184
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 54237184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 51249350 - 51249407
Alignment:
Q  213 tacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||| |||||||||| ||| |||||||||| ||||||||||||||| | ||||||||    
T  51249350 tacacctcatgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 53581958 - 53581870
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||||   |||| |||||||| | ||||||||    ||| |||||||| |||||| ||| |||||||||||||||    
T  53581958 gaaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaacca 53581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 36150132 - 36150218
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||| | | |||| |||||||| | ||| |||||   ||| || ||||| |||||||||| |||||||||||||||    
T  36150132 aaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaacca 36150218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 40480751 - 40480837
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |||||  | | ||||||||    ||| |||||||| |||||||||| |||||||||||||||    
T  40480751 aaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaacca 40480837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 54246246 - 54246160
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||   ||| ||||| || ||||| |||| |||||||||||||||    
T  54246246 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaacca 54246160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 43114559 - 43114663
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43114559 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctttc 43114658  T
Q  273 atctc 277  Q
    |||||    
T  43114659 atctc 43114663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 11825755 - 11825648
Alignment:
Q  170 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctct 269  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  11825755 ggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctct 11825656  T
Q  270 ttcatctc 277  Q
    ||||||||    
T  11825655 ttcatctc 11825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 41282083 - 41281968
Alignment:
Q  162 ttttttccggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 261  Q
    |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  41282083 ttttttcttgaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccata 41281984  T
Q  262 gtttctctttcatctc 277  Q
     |||||||||||||||    
T  41281983 ctttctctttcatctc 41281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 12415558 - 12415454
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttc 12415459  T
Q  273 atctc 277  Q
    |||||    
T  12415458 atctc 12415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 12427618 - 12427514
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctttc 12427519  T
Q  273 atctc 277  Q
    |||||    
T  12427518 atctc 12427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 16803970 - 16804074
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  16803970 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 16804069  T
Q  273 atctc 277  Q
    |||||    
T  16804070 atctc 16804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 16843252 - 16843356
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  16843252 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 16843351  T
Q  273 atctc 277  Q
    |||||    
T  16843352 atctc 16843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 18491707 - 18491811
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||| | |||||||||||| ||||||||||||||||| || |||||||    
T  18491707 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactctttc 18491806  T
Q  273 atctc 277  Q
    |||||    
T  18491807 atctc 18491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 6518568 - 6518484
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 256  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6518568 gaaaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 966932 - 966828
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| | || ||||||||| |||||||||||| |||| ||||||||||    
T  966932 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctttc 966833  T
Q  273 atctc 277  Q
    |||||    
T  966832 atctc 966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 34895835 - 34895735
Alignment:
Q  177 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttcatct 276  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| |||||||||||| |||| ||| ||||||||||    
T  34895835 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctttcatct 34895736  T
Q  277 c 277  Q
    |    
T  34895735 c 34895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 4299520 - 4299414
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||||  ||||||||||||| |||||||||||| |||| || |||||    
T  4299520 gaaaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactctt 4299421  T
Q  271 tcatctc 277  Q
    | |||||    
T  4299420 taatctc 4299414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 4452026 - 4451944
Alignment:
Q  195 taatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttcatctc 277  Q
    ||||||||||   ||||||||||   |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctc 4451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 12531740 - 12531657
Alignment:
Q  193 tttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttcatctc 277  Q
    ||||||||||||| | ||||||||| ||| |||||| || | ||||||||| ||||||||||||||||| |||||||||||||||    
T  12531740 tttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttcatctc 12531657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 34817874 - 34817777
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||| | |||| ||| ||||   |||||||||  |||||| || | |||||||||||| ||||||||||||||| | ||||||||    
T  34817874 aaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 43335861 - 43335777
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaac 257  Q
    ||||||||| |||||||||||||| || |||||   ||||||||   |||| |||||||| |||||||||| |||||||||||||    
T  43335861 aaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 43335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 1750416 - 1750502
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||   ||| |||||||| ||||| |||| |||||||||||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 1750502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 4764824 - 4764738
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||| |||| |||||| || ||||| |||||||||||  |||| ||||   | |||||||||| |||||||||||||||    
T  4764824 aaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaacca 4764738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 19047159 - 19047245
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 19047245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 30838634 - 30838720
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |  ||||   ||||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 30838720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 43490501 - 43490413
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| ||||||||| |||||    
T  43490501 gaaaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataacca 43490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 12302351 - 12302265
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |  ||||| | |||||||||   ||| |||||||| ||||| |||| |||||||||||||||    
T  12302351 aaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 12302265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 16096749 - 16096835
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||| | ||| |||||  |||| |||||||| |||||||| | || ||||||||||||    
T  16096749 aaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaacca 16096835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 13780797 - 13780736
Alignment:
Q  209 attgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    |||||||||  ||| ||||||||| |||||| ||| ||||||||||||||| | ||||||||    
T  13780797 attgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctctt 13780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 40236921 - 40237025
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40236921 aaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctctttc 40237020  T
Q  273 atctc 277  Q
    |||||    
T  40237021 atctc 40237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 33384872 - 33384977
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacac-tattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctcttt 271  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||  |||||||||||||||||||||||| |||||||||||| |||| |||||||||    
T  33384872 aaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctcttt 33384971  T
Q  272 catctc 277  Q
    ||||||    
T  33384972 catctc 33384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 27535329 - 27535225
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||  |||  ||||||||||||||||||||||||||| ||| ||||||||||    
T  27535329 aaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctttc 27535230  T
Q  273 atctc 277  Q
    |||||    
T  27535229 atctc 27535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 31408731 - 31408627
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   ||||||||| ||| |||||||||| ||||| ||||||||||| ||||||||||    
T  31408731 aaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctctttc 31408632  T
Q  273 atctc 277  Q
    |||||    
T  31408631 atctc 31408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 31513289 - 31513393
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    |||||||||||||||||   ||||||||||||| |||||||| ||  ||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  31513289 aaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 31513388  T
Q  273 atctc 277  Q
    |||||    
T  31513389 atctc 31513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 43343724 - 43343636
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||  |||| |||||||| |||||| ||| |||||||||||||||    
T  43343724 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaacca 43343636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 44417034 - 44416946
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||  |||| |||||||| |||||| ||| |||||||||||||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaacca 44416946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 42972854 - 42972940
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||| |||||||| |||| || ||||| | ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  42972854 aaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 42972940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 4638299 - 4638200
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||||| | |||| |||||||| | |||||||||  |||  |||| ||| |||||||||| ||||||||||||||||| ||| ||||    
T  4638299 gaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 10573749 - 10573837
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| | |||| |||||||  |||||||||||  |||| |||||| | |||||||||| |||||||||||||||    
T  10573749 gaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaacca 10573837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 44326178 - 44326266
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| | |||| |||||||  | ||||||||| ||||  |||||||| |||||||||| |||||||||||||||    
T  44326178 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaacca 44326266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 5015397 - 5015483
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 5015483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 35069723 - 35069809
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||   |||| || |||||   ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  35069723 aaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 35069809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 26898499 - 26898414
Alignment:
Q  174 aaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||| | |||| |||||||| | ||||||||   |||| |||||||| |||||||||| ||||||| |||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaacca 26898414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 9216304 - 9216389
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || || |  |||||||||||  |||||||||| || |||||||||| |||||||||||||||    
T  9216304 aaaatgttacatgaacaccctttattcctatatcctattgtacacc-catgcattagagatattttggtaagttcatctcacaacca 9216389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 24001110 - 24001024
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 24001024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 42538529 - 42538443
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 42538443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 43317445 - 43317528
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 256  Q
    ||||||||||||||||| |||||| ||||||||   ||||||||    |||| ||||||| |||||| ||| ||||||||||||    
T  43317445 aaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaa 43317528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 24280694 - 24280597
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    |||||||||| |||||| | |||| |||||||| ||||| ||||   |||||| |||  | |||||||||| |||||||||||| || | ||||||||    
T  24280694 aaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctctt 24280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 39998410 - 39998475
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacatttt 238  Q
    |||||||||||||||||   ||||||||||||  |||||||||||  |||| |||||||| |||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 32473492 - 32473388
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  32473492 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctttc 32473393  T
Q  273 atctc 277  Q
    |||||    
T  32473392 atctc 32473388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 17208076 - 17208180
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    |||||||||| |||||| | |||||||||||||  ||||||||||  ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  17208076 aaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctttc 17208175  T
Q  273 atctc 277  Q
    |||||    
T  17208176 atctc 17208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 30622816 - 30622713
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||||| ||||||||||||| ||||||||  |  ||||||||| ||| |||||||||| || |||||||||||||| ||||||||||    
T  30622816 aaaatgttacatgaacatcctttaatcatacaccctattgtaagcc-catgcattaaggatattttggtaaatttatctcacaaccatactttctctttc 30622718  T
Q  273 atctc 277  Q
    |||||    
T  30622717 atctc 30622713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 5256995 - 5257083
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| ||||||||||||||||||||||||||    
T  5256995 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaacca 5257083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 7617135 - 7617221
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |||||||| | ||| |||||  |||| |||||||| |||||||||| |||||||||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaacca 7617221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 22512307 - 22512393
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaacca 22512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 33801471 - 33801557
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||||| |||| |  ||||| | |||||||||  |||| |||||||| ||||| |||| |||||||||||||||    
T  33801471 aaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaacca 33801557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 2614747 - 2614661
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 2614661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 18033984 - 18034070
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||   ||| |||||||| ||||| |||| |||||||||||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 18034070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 41334761 - 41334675
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| ||||||||   ||| |||||   ||| |||||||| |||||||||| |||||||||||||||    
T  41334761 aaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaacca 41334675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 33855141 - 33855071
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaa 243  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| |||||| ||||||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 55272474 - 55272370
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  55272474 aaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 55272375  T
Q  273 atctc 277  Q
    |||||    
T  55272374 atctc 55272370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 17619250 - 17619146
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  17619250 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctttc 17619151  T
Q  273 atctc 277  Q
    |||||    
T  17619150 atctc 17619146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 32728359 - 32728463
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||| ||||||||| |||| |||||||||||| |||| ||||||||||    
T  32728359 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctctttc 32728458  T
Q  273 atctc 277  Q
    |||||    
T  32728459 atctc 32728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 711962 - 712066
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   |||||||| ||| |||||||||| |||||||||||| |||| ||||||||||    
T  711962 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctttc 712061  T
Q  273 atctc 277  Q
    |||||    
T  712062 atctc 712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 48435673 - 48435573
Alignment:
Q  177 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttcatct 276  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| |||||||||||| |||| ||| ||||||||||    
T  48435673 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctttcatct 48435574  T
Q  277 c 277  Q
    |    
T  48435573 c 48435573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 38851513 - 38851619
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||| ||| ||||||||||||   || |||||||  ||||||||| |||||||||| ||| ||||||||||||||||| ||||||||    
T  38851513 gaaaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctt 38851612  T
Q  271 tcatctc 277  Q
    |||||||    
T  38851613 tcatctc 38851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 35037005 - 35037111
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    |||||||||||||||| || | ||||| ||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||| ||| ||||    
T  35037005 gaaaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctt 35037104  T
Q  271 tcatctc 277  Q
    || ||||    
T  35037105 tcttctc 35037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 960968 - 960864
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   || |||||||||||||||||||| ||||||| | || | || ||||||||||    
T  960968 aaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctctttc 960869  T
Q  273 atctc 277  Q
    |||||    
T  960868 atctc 960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 46827804 - 46827700
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   |||||||| | || ||||||||| || ||||||||| |||| ||||||||||    
T  46827804 aaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctctttc 46827705  T
Q  273 atctc 277  Q
    |||||    
T  46827704 atctc 46827700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 3756346 - 3756242
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| ||||| |||| || ||||||||| |||| ||| ||||    
T  3756346 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-tctt 3756248  T
Q  271 tcatct 276  Q
    ||||||    
T  3756247 tcatct 3756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 27893942 - 27893854
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| ||||||||||||||||||||||||||    
T  27893942 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaacca 27893854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 49229762 - 49229684
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatct 251  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||| ||| ||| |||||| |||||||    
T  49229762 aaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 43514786 - 43514698
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||||| | |||| || ||||| | ||||||||| ||||| |||||||  |||||||||| |||||||||||||||    
T  43514786 gaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaacca 43514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 27864566 - 27864652
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 27864652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 28988475 - 28988572
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||| | |||| ||||||||   |||||||||  |||||| ||||||||||||| ||| ||||||||| ||||| | ||||||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctctt 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 19879990 - 19880060
Alignment:
Q  207 ctattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttcatctc 277  Q
    |||||||||||  |||  |||| |||||||||||||| |||||||||||| |||| |||||||||||||||    
T  19879990 ctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctc 19880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 27550311 - 27550397
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| ||||||| |||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaacca 27550397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 36004162 - 36004110
Alignment:
Q  225 attagggacattttggtaatttcatctcacaaccatagtttctctttcatctc 277  Q
    ||||||||||||||| ||| || |||||||||||||| |||||||||||||||    
T  36004162 attagggacattttgataaatttatctcacaaccatactttctctttcatctc 36004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 48463548 - 48463460
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccata 261  Q
    |||||||||||| |||| |||||| |||||||    ||||||||   |||| |||||||| |||||||||| |||||||||||||||||    
T  48463548 aaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccata 48463460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 41327643 - 41327544
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||  ||| | |||| ||| |||| | ||||||||| | ||||| || |||||||||||||| ||||||||||| ||| | ||||||||    
T  41327643 gaaaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctctt 41327544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 1771364 - 1771278
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| ||||| || |||||| ||| |||||||||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaacca 1771278  T

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Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 23035982 - 23036068
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||| || |||| || ||||| |||||||||||   ||  |||||||| ||||| |||| |||||||||||||||    
T  23035982 aaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaacca 23036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 33703143 - 33703229
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |  ||||   ||||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 33703229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 39631139 - 39631189
Alignment:
Q  209 attgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  39631139 attgtacacctcatgtattagggatattttggtaagttcatctcacaacca 39631189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 55966444 - 55966358
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||| |||| | |||| |||||||  | ||||||||   |||| |||||||| |||||||||| |||||||||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 55966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 28982920 - 28982835
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacc 258  Q
    ||||||||||||||||| | |||| |  ||||| ||||||||||   |||  |||||||| |||||||||| ||||||||||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaacc 28982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 41847973 - 41848070
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||| ||||||| |||  ||| ||||   |||||||||  |||||||||| |||||||||| || |||||| |||||||| | ||||||||    
T  41847973 aaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctctt 41848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 31680902 - 31680990
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||| | |||| |||||| |||||||  | |||||||||  | |  |||||||| |||||||||| |||||||||||||||    
T  31680902 gaaaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaacca 31680990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 41878408 - 41878494
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||   |||| ||||||||   |||||||||   || ||||||||| |||||| ||| |||||||||||||||    
T  41878408 aaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaacca 41878494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 43949863 - 43949813
Alignment:
Q  209 attgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  43949863 attgtacaccccatgtattagggatattttggtaagttcatctcacaacca 43949813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 45490411 - 45490325
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||||||||   |||| | |||||  | ||||||||| ||||| |||||||| | ||| |||| |||||||||||||||    
T  45490411 aaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaacca 45490325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 35554 - 35450
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    |||||||||||| |||| |||||||||||||||  ||||||||||  |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  35554 aaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctttc 35455  T
Q  273 atctc 277  Q
    |||||    
T  35454 atctc 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 33242405 - 33242509
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||  |||| |||| |||||||||||||| |||||||||||| |||| ||||||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctttc 33242504  T
Q  273 atctc 277  Q
    |||||    
T  33242505 atctc 33242509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 27441542 - 27441648
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    ||| |||| ||| |||||||||| ||||||||||||||||| ||||||||    
T  27441542 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 27441641  T
Q  271 tcatctc 277  Q
    |||||||    
T  27441642 tcatctc 27441648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 33253915 - 33254013
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctcttt 271  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| |||||||||||| |||| ||| |||||    
T  33253915 aaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatcttt 33254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 24204087 - 24203999
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||||| |||||| || ||||| |||||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaacca 24203999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 7367551 - 7367637
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||| |||||||||||||| ||||||||   ||||||||   |||| |||||||| |||||||||| |||||||||||||||    
T  7367551 aaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 7367637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 13743319 - 13743233
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 13743233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 13748819 - 13748733
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| |||||||||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 13748733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 26670107 - 26670021
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || |||||   ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 26670021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 30735982 - 30736067
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 256  Q
    |||||||||||||||||||   |||| || ||||| | ||||||||| ||||| ||||| || |||||||||| ||||||||||||    
T  30735982 gaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaa 30736067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 31109320 - 31109216
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctttc 272  Q
    ||||||||||||||||| | ||||||||||||  | ||| |||||  |||||| |||||| |||||| ||| |||| || || |||| | ||||||||||    
T  31109320 aaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctctttc 31109221  T
Q  273 atctc 277  Q
    |||||    
T  31109220 atctc 31109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 7273433 - 7273350
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaa 256  Q
    ||||||||||||||||| | |||| || |||||  ||||||||||  |||| ||||| || |||||||||| ||||||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaa 7273350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 7292749 - 7292835
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||| ||||| |||||| ||||||||   ||| |||||   ||| |||||||| |||||||||| |||||||||||||||    
T  7292749 aaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaacca 7292835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 9698431 - 9698345
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 9698345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 26466801 - 26466887
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    |||||||||||| |||| | |||| || ||||| | |||||||||  |||| |||||||  |||||||||| |||||||||||||||    
T  26466801 aaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaacca 26466887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 3213402 - 3213499
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    |||||||||||| |||| | |||| |||||||    |||||||||  |||| |||| ||| |||||||||| ||||| ||||||||||| ||| ||||    
T  3213402 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatctt 3213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 30014345 - 30014442
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||| | |||| || ||||  | ||| ||||   |||| |||||| | |||||||||| ||||||||||||||||| ||| ||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatctt 30014442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 45819 - 45713
Alignment:
Q  171 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaaccatagtttctctt 270  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    ||| |||| ||| |||||||||| ||||||||||||||||| ||||||||    
T  45819 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 45720  T
Q  271 tcatctc 277  Q
    |||||||    
T  45719 tcatctc 45713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 687 - 773
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || |||||   ||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 11253 - 11339
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||| |||||||||   |||| |||||||| | |||||||||  |||  |||||||| |||||||||| |||||||||||||||    
T  11253 aaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaacca 11339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 112657 - 112743
Alignment:
Q  173 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctcacaacca 259  Q
    ||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| |||||||||||||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 112743  T

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