View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_high_15 (Length: 273)
Name: NF16104_high_15
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 45205639 - 45205764
Alignment:
| Q |
129 |
gaacctgtgagcctctgaggcgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaataga |
228 |
Q |
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| T |
45205639 |
gaacctatgagcctctgaggcgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaagaga |
45205738 |
T |
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| Q |
229 |
aaatgacctgcataattacaataatt |
254 |
Q |
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| T |
45205739 |
aaatgacctgcgtaattacaataatt |
45205764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5051826 - 5051697
Alignment:
| Q |
1 |
aacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttct---- |
96 |
Q |
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| T |
5051826 |
aacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagc |
5051727 |
T |
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| Q |
97 |
--taatctcacagctccaattcagtgaacg |
124 |
Q |
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| T |
5051726 |
aataatctcacagctccaattcaatgaacg |
5051697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 45247291 - 45247389
Alignment:
| Q |
150 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctgcataattaca |
248 |
Q |
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| T |
45247291 |
gacattaacaattcttccttctttcttactttggtgtgctgtttttttcattgtgtccaacaaaagatttgtcaagagaaaatgacctgcacaattaca |
45247389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 45231456 - 45231554
Alignment:
| Q |
150 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctgcataattaca |
248 |
Q |
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| T |
45231456 |
gacattaacaattcttccttcttttttactttggtgtgctgttttcttcattgtgtccaacaaaagatttgtcaagagaaaatgacctgtacaattaca |
45231554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 45212504 - 45212608
Alignment:
| Q |
134 |
tgtgagcctctgaggcgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatg |
233 |
Q |
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| T |
45212504 |
tgtgagcttctgaggagacattaacaattcttccttcagtcttactttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatg |
45212603 |
T |
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| Q |
234 |
acctg |
238 |
Q |
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||||| |
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| T |
45212604 |
acctg |
45212608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 51273542 - 51273673
Alignment:
| Q |
1 |
aacatggagaacttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttc---- |
95 |
Q |
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| T |
51273542 |
aacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttag |
51273641 |
T |
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| Q |
96 |
--ttaatctcacagctccaattcagtgaacga |
125 |
Q |
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| T |
51273642 |
ctttaatctcacagctccaattcattgaacga |
51273673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 19277418 - 19277506
Alignment:
| Q |
150 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctg |
238 |
Q |
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| T |
19277418 |
gacattaataattcttccttctttcttgctttcatttgctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctg |
19277506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 14907619 - 14907717
Alignment:
| Q |
1 |
aacatggagaacttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta |
98 |
Q |
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| T |
14907619 |
aacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatccatctcaaagcgcatctta |
14907717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 19294849 - 19294937
Alignment:
| Q |
150 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctg |
238 |
Q |
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| T |
19294849 |
gacaataataattcttccttctttcttgctttcattagctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctg |
19294937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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