View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_high_20 (Length: 231)
Name: NF16104_high_20
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 5795885 - 5795663
Alignment:
| Q |
10 |
gcagagaacttgtgtagtatgaaggttatcttgagcaacatgtcctctactttcnnnnnnnggggggcatagagtgccattttattgggaagggtttgga |
109 |
Q |
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| T |
5795885 |
gcagagaacttgtgtagtatgaaggttatcttcagcaacatgtcctctactttctttttttggggggcatagagtgccattttattgggaagggtttgga |
5795786 |
T |
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| Q |
110 |
aaagctttgatccgttaaaagtcgttatcttt-cttagcaaatgcttcaacgttgtttacctacaagggagaatttgttgaggtgtggggcatttgagcc |
208 |
Q |
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| T |
5795785 |
aaagctttgatccgttaaaagtcattatcttttcttagcaaatgcttcaacgctgtttacctacaagggagaatttgttgaggtgtggggcatttgagcc |
5795686 |
T |
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| Q |
209 |
gagaaatgaaccgaaatgttgct |
231 |
Q |
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| T |
5795685 |
gggaaatgaaccgaaatgttgct |
5795663 |
T |
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