View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_high_6 (Length: 368)
Name: NF16104_high_6
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 8058843 - 8058503
Alignment:
| Q |
17 |
aattagaaagagtaatgtaggaaaaaataaaataaaggggttcttaatcgattgatcgaacttcggtgttagctgacattttctctaaatctaacggtct |
116 |
Q |
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| T |
8058843 |
aattagaaagagtaatgtaggaaaaaataaaataaaggggttcttaatcgattgatcgaacttcggtgttagctgacattttctctaaatctaacggtct |
8058744 |
T |
|
| Q |
117 |
ctacaactacaacatcgtgcatcaactcgagcggatccaaattcttcttattggtaatttgtgtcaggaagctaagggaagtacctgtgatgtgcttgaa |
216 |
Q |
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| T |
8058743 |
ctacaactacaacatcgtgcatcaactcgagcggatccaaattcttcttattggtaatttgtgtcaggaagctaagggaagtacctgtgatgtgcttgaa |
8058644 |
T |
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| Q |
217 |
tggtactgttgtagatgacattgatgatggttaatctctctttcatatttcttatcaacaattattgtaatgagagaattatcaacttcatttccattaa |
316 |
Q |
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| T |
8058643 |
tggtactgttgtagatgacattgatgatggttaacctctctttcatatttcttatcaacaattattgtaatgagagaattatcaacttcatttccattaa |
8058544 |
T |
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| Q |
317 |
tacccttgttgtcatcttgcatttttcttctaagtttctct |
357 |
Q |
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| T |
8058543 |
tacccttgttgtcatcttgcatttttcttctaagtttctct |
8058503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 24776995 - 24777146
Alignment:
| Q |
202 |
tgtgatgtgcttgaatggtactgttgtagatgacattgatgatggttaatctctctttcatatttcttatcaacaattattgtaatgagagaatt-atca |
300 |
Q |
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|||||||||||||||| |||||||||| |||| |||||| || || ||| | ||||||||||| |||||||| |||||||||||||||| | |||| |
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| T |
24776995 |
tgtgatgtgcttgaataatactgttgtatatgaaattgattat---tagtctgt--ttcatatttctaatcaacaactattgtaatgagagaaatcatca |
24777089 |
T |
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| Q |
301 |
acttcatttccattaatacccttgttgtcatcttgcatttttcttctaagtttctct |
357 |
Q |
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|||| |||| |||||||||||||||||| |||||||| ||||||||||| |||||| |
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| T |
24777090 |
actttattttcattaatacccttgttgttatcttgcaaatttcttctaagcttctct |
24777146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 6188447 - 6188480
Alignment:
| Q |
98 |
tctctaaatctaacggtctctacaactacaacat |
131 |
Q |
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| T |
6188447 |
tctctaaatttaacggtctctacaactacaacat |
6188480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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