View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_high_9 (Length: 299)
Name: NF16104_high_9
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 10121433 - 10121702
Alignment:
| Q |
20 |
ataggaaagtgataggagcaagatactatatgagtggatatgaagcagaagaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctgg |
119 |
Q |
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| T |
10121433 |
ataggaaagtgataggagcaagatactatatgagtggatatgaaacagaagaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctgg |
10121532 |
T |
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| Q |
120 |
tcatgggagccatacagcttccacagcagcaggacgatacgtctcaaacatgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatg |
219 |
Q |
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| T |
10121533 |
tcatgggagccatacagcttccacagcagcaggacgatacgtctcaaacatgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatg |
10121632 |
T |
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| Q |
220 |
gctaggatttctgtttacaaaacttgttgggattcaggttgctatgatgtggacttgttagctgcctttg |
289 |
Q |
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| T |
10121633 |
gctaggatttctgtttacaaaacttgttgggattcaggttgctatgatgtggacttgttagctgcctttg |
10121702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 30628645 - 30628375
Alignment:
| Q |
19 |
aataggaaagtgataggagcaagatactatatgagtggatatgaagcagaagaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctg |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| | |||| |||| |||||||| || || |||||| | | |
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| T |
30628645 |
aataggaaagtgataggagcaagatactataagagtggatatgaagcagaggaagagtcaaatgcaaaaatctcattcagatcagctagggacagcacag |
30628546 |
T |
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| Q |
119 |
gtcatgggagccatacagcttccacagcagcaggacgatacgtctcaaacatgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaat |
218 |
Q |
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| T |
30628545 |
gtcatggtagccatacagcttcaatagctgcagggagatatgtacaaaacatgaattataaaggactagcaagtggaggtgcaaggggaggtgcacctat |
30628446 |
T |
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| Q |
219 |
ggctaggatttctgtttacaaaacttgttgggattcaggttgctatgatgtggacttgttagctgcctttg |
289 |
Q |
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|||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
30628445 |
ggctagaattgctgtgtacaaaacatgttgggattcaggttgctatgatgtggacttgctagctgcatttg |
30628375 |
T |
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