View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_low_1 (Length: 789)
Name: NF16104_low_1
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 326 - 773
Target Start/End: Original strand, 15244835 - 15245282
Alignment:
| Q |
326 |
atcaagggtctatctttattatcagagtcgagcctccaatatcatagaaacgaccctaaatgagatgattgacccaatcattcctaagagaggcttaaga |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15244835 |
atcaagggtctatctttattatcagagtcgagcctccaatatcataggaacgaccctgaatgagatgattgacccagtcattcctaagagaggcttaaga |
15244934 |
T |
|
| Q |
426 |
cagagccaagatatgtcacaatgaaactattatttataagcgaccaaccttccaaagtcaaaatgtccctcaacggatgcaaaattcaatcgctaatatt |
525 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15244935 |
cagagccaagatatgtcacaatgaaactattatttataagcgaccaaccttccaaagtcaaaatgtccctcaacggatgcaaaattcaatcactaatatt |
15245034 |
T |
|
| Q |
526 |
ttagttgtgcaagcaattttggctatcgttaaataccttggtttaccgtccatggtgggaagatgcaaaaaggaaacattcaatttcaccaaacacaaag |
625 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15245035 |
ttagttgcgcaagcaattttggctatcgttaaataccttggcttaccgtccatggtaggaagatgcaaaaaggaaacattcaatttcaccaaagacaaag |
15245134 |
T |
|
| Q |
626 |
tgtggccaaaaatcaattctttgaccaacaattgtatatctaaggtgtgaaggaaggtgatgactaagtcaattttacagtcaatcccgttctatgtttt |
725 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15245135 |
tgtggccaaaagtcaattcttggaccaacaattgtatatctaaggtgtgaaggaaggtgatgactaagtcaattttacagtcaatcccgttctatgtttt |
15245234 |
T |
|
| Q |
726 |
gagcatttttcttcttccatctactctcactaagaagacccatttttg |
773 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15245235 |
gagcatttttcttcttccatctactctcactaagaagacccatttttg |
15245282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 15239460 - 15239588
Alignment:
| Q |
15 |
cacagacgataccccttagactcagatgcataaccaagaaatatgcacttaacggctcttggagctaatttgccatcattgacatgtacatatgcaggat |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| ||| |
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| T |
15239460 |
cacaaacgataccccttagactcagatgcataagaaagaaatatgcactcaacggctcttggagctaatttgccatcattgacaagtgcatatgctggac |
15239559 |
T |
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| Q |
115 |
attcaaaaattcttaaattagaataatca |
143 |
Q |
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| T |
15239560 |
atccaaaaattcttaaattagaataatca |
15239588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 23045959 - 23045831
Alignment:
| Q |
15 |
cacagacgataccccttagactcagatgcataaccaagaaatatgcacttaacggctcttggagctaatttgccatcattgacatgtacatatgcaggat |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23045959 |
cacaaacgataccccttagactcagatgcataaccaagaaatatgcactcaacagctcttggagctaatttgccatcattgacatgtgcatatgcaggac |
23045860 |
T |
|
| Q |
115 |
attcaaaaattcttaaattagaataatca |
143 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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|
| T |
23045859 |
atccaaaaattcttaaattagaataatca |
23045831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 29473259 - 29473133
Alignment:
| Q |
15 |
cacagacgataccccttagactcagatgcataaccaagaaatatgcacttaacggctcttggagctaatttgccatcattgacatgtacatatgcaggat |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| | || |
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| T |
29473259 |
cacaaacgataccccttagactcagatgcataaccaagaaatatgcactcaacagctcttggagctaatttgccatcattgacatgtgcatatgtaagac |
29473160 |
T |
|
| Q |
115 |
attcaaaaattcttaaattagaataat |
141 |
Q |
| |
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|| |||||||||||||||||||||||| |
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|
| T |
29473159 |
atccaaaaattcttaaattagaataat |
29473133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 3075282 - 3075368
Alignment:
| Q |
15 |
cacagacgataccccttagactcagatgcataaccaagaaatatgcacttaacggctcttggagctaatttgccatcattgacatgt |
101 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
3075282 |
cacaaacgataccccttagactcagatgcataatcaagaaatatgcactcaacggctcgtggagctaattttccatcattgacatgt |
3075368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 19278947 - 19278992
Alignment:
| Q |
326 |
atcaagggtctatctttattatcagagtcgagcctccaatatcata |
371 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||| ||| ||||| |
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|
| T |
19278947 |
atcaagggcctatctttattaccagagtcgagcctctaatttcata |
19278992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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