View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_low_11 (Length: 308)
Name: NF16104_low_11
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 25002781 - 25003069
Alignment:
| Q |
1 |
cagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcaccaacttcttctccctcttctccaccacaacagaatttggataacgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25002781 |
cagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcaccaacttcttctccctcttctccaccacaacagaatttggataacgtt |
25002880 |
T |
|
| Q |
101 |
gttccatgcttcaatccaaccattaaccgccctcgatgcctcgctagaaagaaactctttgctgttgcaccagtttttactgaacacacagacacatatt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||| |
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| T |
25002881 |
gttccatgcttcaacccaaccattaaccgccctcgatgcctcgctagaaagaaacttttcgctgttacacctgtttttactgaacacacagacacatata |
25002980 |
T |
|
| Q |
201 |
tggtttagatctgagtgttatgatatcataattcacttatctttgatgtatttttgttctcgaacgcgattattatcaattaatcatac |
289 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
25002981 |
tggtttagatctgagtgttatgatataataattcacttatctttgatgtatttttgtcctcgaacgctattattatcaattaatcatac |
25003069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 24998774 - 24998580
Alignment:
| Q |
4 |
caggaaactgcaaaatcaaatcaacttattagatctctct-caactctcaccaacttcttctccctc---ttctccaccacaacagaatttggataacgt |
99 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||| |||| |||||| ||| |||| || ||||||| ||| ||||||||||||||| || |
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| T |
24998774 |
caggaagctgcaaaatcaaatcaacttattagaactctcaacaacaa-caccaatttcacctccttccttttctccatcaccacagaatttggataatgt |
24998676 |
T |
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| Q |
100 |
tgttccatgcttcaatccaaccattaaccgccctcgatgcctcgctagaaagaaactctttgctgttgcaccagtttttactgaacacacagacac |
195 |
Q |
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|| || |||||| |||| ||| ||||||||||||| ||||| ||||| ||||||||||| || ||| |||| ||||||||||||||||||||||| |
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| T |
24998675 |
cgtaccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactgaacacacagacac |
24998580 |
T |
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