View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16104_low_12 (Length: 307)

Name: NF16104_low_12
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16104_low_12
NF16104_low_12
[»] chr6 (1 HSPs)
chr6 (17-307)||(28879332-28879621)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 28879621 - 28879332
Alignment:
Q  17 tgtgccatgagtatttttattaacgaaaggatgcttataacatatcattaatcaaataataatatatattagtgatgattcttgtgtactcttcattttt 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  28879621 tgtgccatgagtatttttattaacgaaaggatgcttatagcatatcattaatcaaataataatatat--tagtgatgattcttgtgtactcctcattttt 28879524  T
Q  117 taaaatttaaatccaagctactaggcacgtgtaaagagacacgcgtgacaacatggtatgttgagtaaaaatataacatg-tatacaatgaagtacggtt 215  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  28879523 taaaatttaaattcaagctactaggcacgtgtaaagagaagcgcgtgacaacatggtatgttgagtaaaaatgtaacatggtatacaatgaagtacggtt 28879424  T
Q  216 attgctgtttccaaagaagacttggacgtttgttttttgatgacagttgaaagagacatttcagtatcatacagtatggaggattctcttcc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28879423 attgctgtttccaaagaagacttggacgtttgttttttgatgacagttgaaagagacatttcagtatcatacagtatggaggattctcttcc 28879332  T

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