View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_low_14 (Length: 300)
Name: NF16104_low_14
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_14 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 39786408 - 39786211
Alignment:
| Q |
18 |
gtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgatgtttgttgggctttgg |
117 |
Q |
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| T |
39786408 |
gtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgatgtttgttgggctttgg |
39786309 |
T |
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| Q |
118 |
ggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatagggaattggatgcggaaagagggaaccaaaataacaagggt |
215 |
Q |
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| T |
39786308 |
ggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatagggaattggatgcggaaagagggaaccaaaataacaagggt |
39786211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 39786173 - 39786126
Alignment:
| Q |
244 |
gtgatgaaattgaaaacaatattaatgaaacatattattatgatgatg |
291 |
Q |
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| T |
39786173 |
gtgatgaaattgaaaacaatattaatgaaacatattattatgatgatg |
39786126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 38177003 - 38176903
Alignment:
| Q |
81 |
aagacagtgaatggtgatgatgtttgttgggctttggggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatagggaat |
180 |
Q |
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| T |
38177003 |
aagacagtgaatggtgatgatatatgttgggctttggggacacttggttttgatgattatgcttaaccaatgagaaggtatttgcatagatatagagaat |
38176904 |
T |
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| Q |
181 |
t |
181 |
Q |
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| T |
38176903 |
t |
38176903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 36970958 - 36970890
Alignment:
| Q |
45 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgatgtttgttgggct |
113 |
Q |
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| T |
36970958 |
ggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggacgatatctgttgggct |
36970890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 49536687 - 49536587
Alignment:
| Q |
81 |
aagacagtgaatggtgatgatgtttgttgggctttggggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatagggaat |
180 |
Q |
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| T |
49536687 |
aagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcatagatatagagaat |
49536588 |
T |
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| Q |
181 |
t |
181 |
Q |
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| T |
49536587 |
t |
49536587 |
T |
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Target: scaffold0392 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 14714 - 14620
Alignment:
| Q |
81 |
aagacagtgaatggtgatgatgtttgttgggctttggggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatag |
175 |
Q |
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| T |
14714 |
aagactgtaaatggtgatgatatttgttgggctttagcaacacttggttttgatgattatgctgagccaatgagaaggtacttgcataggtatag |
14620 |
T |
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