View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16104_low_20 (Length: 280)
Name: NF16104_low_20
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 37961621 - 37961368
Alignment:
| Q |
11 |
cacagacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961621 |
cacaaacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
37961522 |
T |
|
| Q |
111 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961521 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
37961422 |
T |
|
| Q |
211 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttcc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961421 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttcc |
37961368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 48 - 262
Target Start/End: Original strand, 37906481 - 37906698
Alignment:
| Q |
48 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
147 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | || || | || ||||||||||| |||||||||| | |
|
|
| T |
37906481 |
atgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacactccctctcaccttcttcgacatttcatggttttact |
37906580 |
T |
|
| Q |
148 |
gtcacccaa---ttcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
244 |
Q |
| |
|
|||| || | || ||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
37906581 |
gtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37906680 |
T |
|
| Q |
245 |
aaccctcctacacttctt |
262 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
37906681 |
aacccttcaacacttctt |
37906698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 262
Target Start/End: Original strand, 37914644 - 37914861
Alignment:
| Q |
48 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
147 |
Q |
| |
|
|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| | | || | |||||||| ||||| | |||||||| | |
|
|
| T |
37914644 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaatccctctcactttctttgacatttcttggttttact |
37914743 |
T |
|
| Q |
148 |
gtca---cccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
244 |
Q |
| |
|
| | ||| || |||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
37914744 |
gcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37914843 |
T |
|
| Q |
245 |
aaccctcctacacttctt |
262 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
37914844 |
aacccttcaacacttctt |
37914861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 3782807 - 3782967
Alignment:
| Q |
102 |
ccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatt |
201 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| |||||||||| |||| | ||| |||| |||||||||||||| |||||||||||||||||||| | |
|
|
| T |
3782807 |
ccaaccattcttcccctcacattcttggacattccatggttttgctgtcgaaccattaaacgcatcttcttctaccactttcctcatccaactcatcact |
3782906 |
T |
|
| Q |
202 |
tccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttctt |
262 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
3782907 |
ttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacacttctt |
3782967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University