View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_low_22 (Length: 263)
Name: NF16104_low_22
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 52604981 - 52604740
Alignment:
| Q |
7 |
ggagcagagaagaagaacagtagtagtgtggcagtacttgatgatgatgttcacaaatgcaaccacaaaagaaaacacttgtcttcttgctacaacaaca |
106 |
Q |
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| T |
52604981 |
ggagcaaagaagaagaacagtagcagtgtggcagtacttgatgatgatgttcacaaatgcaaccacaaaagaaaacacttgtcttcttgctacaacaaca |
52604882 |
T |
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| Q |
107 |
cgtcatcatcagaggacaaaagggttgttcctacaggtccaaatccactacacaacaggtagtaaagtcatcaacgtttttcaacaaacaagacatcatg |
206 |
Q |
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| T |
52604881 |
cgtcatcatcagaggacaaaagggtcgttcctacaggtccaaatccactacacaacaggtagtaaagtcatcaacgtttttcaacaaacaagacatcatg |
52604782 |
T |
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| Q |
207 |
gaatggacatggac-aacatgttttctcttccattaagtaat |
247 |
Q |
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| T |
52604781 |
gaatggacatggacaaacatgttttctcttccattaagtaat |
52604740 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 16905748 - 16905712
Alignment:
| Q |
132 |
tgttcctacaggtccaaatccactacacaacaggtag |
168 |
Q |
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| T |
16905748 |
tgttcctacaggtccaaatccattacataacaggtag |
16905712 |
T |
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