View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_low_24 (Length: 250)
Name: NF16104_low_24
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_24 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 28879126 - 28879218
Alignment:
| Q |
158 |
tgatactacagacctatagtgttaaatgagaaatttttcaaaagcttgccttaaatggaaaaggaaaattgtaacaatagtatagggaatgaa |
250 |
Q |
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| T |
28879126 |
tgatactacagacctatagtgttaaatgagaaatttttcaaaagcttgccttaaatggaaaaagaaaattgtaacaatagtatagggaatgaa |
28879218 |
T |
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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 28879043 - 28879106
Alignment:
| Q |
70 |
tctattcttgaggtacaatattgtttaaacttcaattagaccaatttgatgtcattgatatagg |
133 |
Q |
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| T |
28879043 |
tctattcttgaggtacaatattgtttaaacttcatttagaccaatttgatgtcattgatatagg |
28879106 |
T |
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