View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_low_4 (Length: 481)
Name: NF16104_low_4
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 23 - 442
Target Start/End: Complemental strand, 29015892 - 29015473
Alignment:
| Q |
23 |
cagagaatcaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgct |
122 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29015892 |
cagagaaacaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacatttct |
29015793 |
T |
|
| Q |
123 |
ggtaaacgcataaaacattaacctagttgctacattaatttgtcaacttatatgttacttccaagtgcttatataactgtttctctatgttaccatctag |
222 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29015792 |
ggtaaacgcataaaacattaacctagatgctacattaatttgtcaacttatatgttacttccaagtgcttatataactgtttctctatgttaccatctag |
29015693 |
T |
|
| Q |
223 |
gaaattttttctatcagaggaactgaaatatatgcatttgtcaaacggatggatctttctcagatgatttgttcgagaacctgaaaagaaattcacgcca |
322 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||| ||| |
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| T |
29015692 |
gaaattttttctatcagaggaactgaaatatacgcatttgtcaactggatggatcgtactcaaatgatttgttcgagaacctgaaaagaaatttggacca |
29015593 |
T |
|
| Q |
323 |
gaatgattaatcatttctagaaaaaagattgtgtagaaaggaaacaaggaactgtcctgtttgtaattgtatgtcaaaatgtgaatgtgtacatgtcaga |
422 |
Q |
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||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
29015592 |
gaatggttaatcatttctaaaaaaaagattgtgtagaagggaaacaaggaactgtcctgtttgtaattgtatgtcaaaatatgaatgtgtacatgttaga |
29015493 |
T |
|
| Q |
423 |
aaacttgtgaacttgtttca |
442 |
Q |
| |
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||| |||||||||||||||| |
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| T |
29015492 |
aaatttgtgaacttgtttca |
29015473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 23 - 442
Target Start/End: Complemental strand, 24086266 - 24085848
Alignment:
| Q |
23 |
cagagaatcaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgct |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
24086266 |
cagagaatcaccaaacaagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctgttaaagaattaaatcaaagtgacattgct |
24086167 |
T |
|
| Q |
123 |
ggtaaacgcataaaacattaacctagttgctacattaatttgtcaacttatatgttacttccaagtgcttatataactgtttctctatgttaccatctag |
222 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| ||| |
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| T |
24086166 |
ggtaaacgcataaaacattaacctagatgctacattaatttgtcaacttatatcttacttccaaatgcttatataattgtttctctatgttatcatatag |
24086067 |
T |
|
| Q |
223 |
gaaattttttctatcagaggaactgaaatatatgcatttgtcaaacggatggatctttctcagatgatttgttcgagaacctgaaaagaaattcacgcca |
322 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||| |||||||||| | || | ||||||||||||||||||||||||||||||| ||| |
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| T |
24086066 |
gaaacgttttctatcagaggaactgaaata-atgcatttgtcaaccggatggatcgtacttaaatgatttgttcgagaacctgaaaagaaattcggacca |
24085968 |
T |
|
| Q |
323 |
gaatgattaatcatttctagaaaaaagattgtgtagaaaggaaacaaggaactgtcctgtttgtaattgtatgtcaaaatgtgaatgtgtacatgtcaga |
422 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
24085967 |
gaatggttaatcatttctagaaaaaagattgtgtagacaggaaacaaggaactgtcctgtttttaattgtatgtcaaaacgtgaatgtgtacatgtcaga |
24085868 |
T |
|
| Q |
423 |
aaacttgtgaacttgtttca |
442 |
Q |
| |
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||| |||||||||||||||| |
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|
| T |
24085867 |
aaatttgtgaacttgtttca |
24085848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 16168345 - 16168236
Alignment:
| Q |
39 |
aagagagaccataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgctggtaaacgcataaaac |
138 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
16168345 |
aagagacaccataaatttattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcgaagtgacattgctggcaaacgcataaaac |
16168246 |
T |
|
| Q |
139 |
attaacctag |
148 |
Q |
| |
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| ||||||| |
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| T |
16168245 |
ttgaacctag |
16168236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 21880750 - 21880662
Alignment:
| Q |
48 |
cataaattcattgaattttatgatgttagagcagcagatgcagctcttaaagcattaaatcaaagtgacattgctggtaaacgcataaa |
136 |
Q |
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||||| || ||||||| |||||||| ||||| ||||| ||||| |||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
21880750 |
cataagtttattgaatactatgatgtaagagctgcagaagcagcacttaaatcattaaataggagtgacatagctggtaaacgcataaa |
21880662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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