View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16104_low_6 (Length: 425)
Name: NF16104_low_6
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 52289081 - 52288672
Alignment:
| Q |
15 |
aaaagaatcccatgttttatatgtgtctacacaaaaactttaagcagggcctagccttaaccgtgtgcaagatatactaaa-gtgtgttaaaacaaaaac |
113 |
Q |
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| T |
52289081 |
aaaagaatcccatgttttgtatgtgtctacacaaaaagcttaagcagggcctaaccttaaccgtgtgcaagttatactaaaagtgtgttaaaacaaaaac |
52288982 |
T |
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| Q |
114 |
aaaaccaggaatccggtaaaaagtggaaattgtgtaatccttggaatttgattagttctactgttattatttaatcatcatcaaatgcagccaagccaac |
213 |
Q |
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| T |
52288981 |
aaaaccaggaatccggtaaaaagtggaaattgtgtaatccttggaatttgattagttctactgttattatttaatcatcatcaaatgcagccaagccaac |
52288882 |
T |
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| Q |
214 |
aggtactataccaaacgactttaatgaatgcggaattgcatgctatnnnnnnnntatatatcttattcacaaaccaaatttgcttgcatgggaatttgta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52288881 |
aggtactataccaaacgactttaatgaatgcggaattgcatgctataaaaa----aaatatcttattcacaaaccaaatttgcttgcatgggaatttgta |
52288786 |
T |
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| Q |
314 |
aataagacatatgtaagattccaaaatggctcttaaatttatagacaaacttttaacaaaatgcaccataagtcgtgggtc--tattatgctcgacaaat |
411 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52288785 |
aataagacatatataagattccaaaatggctcttaaatttatagacaaacttttaacaaaatgcaccataagtcgtgggtcaatattatgctcgacaaat |
52288686 |
T |
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| Q |
412 |
actctatttactgc |
425 |
Q |
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| T |
52288685 |
actctatttactgc |
52288672 |
T |
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