View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16104_low_9 (Length: 338)
Name: NF16104_low_9
Description: NF16104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16104_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 51454182 - 51454501
Alignment:
| Q |
1 |
cagtcacatatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccattcctgatcatgatcatcgagaaacacaacctactgccaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51454182 |
cagtcacttatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccattcctgatcatgatcatcaagaaacacaacctactgccaa |
51454281 |
T |
|
| Q |
101 |
tgttggcgcggaaacggtaccgttggaggatggtgacgtggcacaagctgtcggtgttggagctgaaacggcgtcgttgaaggatgatgaacgtgatgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51454282 |
tgttggcgcggaaacggtaccgttggaggatggtgacgtggcacaagctgtcggtgttggagctgaaacggcgtcgttgaaggatgatgaacgtgatgac |
51454381 |
T |
|
| Q |
201 |
gtggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51454382 |
gtggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggtt |
51454481 |
T |
|
| Q |
301 |
cggttgaaggtggtgacatt |
320 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
51454482 |
cggttgaaggtgatgacatt |
51454501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 51478365 - 51478672
Alignment:
| Q |
2 |
agtcacatatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccattcctgatcatgatcatcgagaaacacaacctactgccaat |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51478365 |
agtcacgtatatagtgaaaatcaaagtcatactcaccgtcccggacccagatgaacccattcctgatcatgatcatcgagaaacacaacccactgccaat |
51478464 |
T |
|
| Q |
102 |
gttggcgcggaaacggtaccgttggaggatggtgacgtggcacaagctgtcggtgttggagctgaaacggcgtcgttgaaggatgatgaacgtgatgacg |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51478465 |
gttggcgcggaaatggtaccgttggaggatggtgatgtggcacaagctatcggtgttggagctgaaacggcgtcgttgaaggacgatgaacgtgatgacg |
51478564 |
T |
|
| Q |
202 |
tggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttc |
301 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| |||||||| |||| ||||||| ||||||||||||||| | ||| || ||||||||| ||||| |
|
|
| T |
51478565 |
tggtggaagtagctgaagaatctgttcctgatcgaggaaaacaagacatggatgttggacccaaaacggtggtgttgttgtcgacggacgatgatggttc |
51478664 |
T |
|
| Q |
302 |
ggttgaag |
309 |
Q |
| |
|
||||||| |
|
|
| T |
51478665 |
tgttgaag |
51478672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 319
Target Start/End: Original strand, 51474326 - 51474482
Alignment:
| Q |
163 |
ctgaaacggcgtcgttgaaggatgatgaacgtgatgacgtggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgc |
262 |
Q |
| |
|
||||||| | ||||||||| || | |||| ||||||| |||| | |||||||||||||| | |||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
51474326 |
ctgaaacagtgtcgttgaatgacggtgaaggtgatgatgtggcagcagcagctgaagaatatgttcctgatcgagaaaaacaaactatggatgttggcgc |
51474425 |
T |
|
| Q |
263 |
caaaacggtggtgtcgctgttgaaggacgatgaaggttcggttgaaggtggtgacat |
319 |
Q |
| |
|
|||| | ||||||| | ||| ||||||||||||||| ||||||| || |||||| |
|
|
| T |
51474426 |
caaagcagtggtgttgttgtcatcggacgatgaaggttccgttgaagctgatgacat |
51474482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 319
Target Start/End: Original strand, 18078871 - 18079076
Alignment:
| Q |
114 |
acggtaccgttggaggatggtgacgtggcacaagctgtcggtgttggagctgaaacggcgtcgttgaaggatgatgaacgtgatgacgtggtggaagcag |
213 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||| |||||||||| ||| ||| ||| |||||||| || | |||| |||| ||||||| | ||||| |
|
|
| T |
18078871 |
acggtaccgttggagggtgatgacgtggcaccagctatcggtgttggcgctaaaatggcttcgttgaacgacgctgaaggtgacgacgtggcagcagcag |
18078970 |
T |
|
| Q |
214 |
ctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaaggttcggttgaaggtgg |
313 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| ||| | |||||||||||| |||| || | ||| || ||||||||||||||| ||||||| || |
|
|
| T |
18078971 |
ttgaagaatttgctcctgatcgagaaaaacaagctatggactttggcgccaaaatggtgttgctgttgtcgacggacgatgaaggttctgttgaagctga |
18079070 |
T |
|
| Q |
314 |
tgacat |
319 |
Q |
| |
|
|||||| |
|
|
| T |
18079071 |
tgacat |
18079076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 319
Target Start/End: Original strand, 18076928 - 18077171
Alignment:
| Q |
76 |
atcgagaaacacaacctactgccaatgttggcgcggaaacggtaccgttggaggatggtgacgtggcacaagctgtcggtgttggagctgaaacggcgtc |
175 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||||||||||| |||| | |||| ||||||| ||| ||| |||| | ||||| | ||||| |
|
|
| T |
18076928 |
atcgagaaacacagcctactttgaatgttggcgcccaaacggtaccgtcagagggagatgacttggcacatgctatcgatgttagttctgaatcagcgtc |
18077027 |
T |
|
| Q |
176 |
gttgaaggatgatgaacgtgatgacgtggtggaagcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtg |
275 |
Q |
| |
|
|||||| || | |||| ||||||| |||| || |||||||| |||||| |||||| ||||||||||||| | ||| ||||||||||||| || |||||| |
|
|
| T |
18077028 |
gttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttggcgccaatacagtggtg |
18077127 |
T |
|
| Q |
276 |
tcgctgttgaaggacgatgaaggttcggttgaaggtggtgacat |
319 |
Q |
| |
|
| ||| | |||||||||||||| ||||||| || |||||| |
|
|
| T |
18077128 |
gtgttgtcgtcagacgatgaaggttccgttgaagctgatgacat |
18077171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 18078787 - 18078865
Alignment:
| Q |
2 |
agtcacatatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccattcctgatcatgatcatcga |
80 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||||||| |
|
|
| T |
18078787 |
agtcacatatacagtaaaaatcaaagtcagactcacagtcccggacctagacgaacccattcctgatcatgatcatcga |
18078865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 18076872 - 18076907
Alignment:
| Q |
2 |
agtcacatatatagtgaaaatcaaagtcacactcac |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18076872 |
agtcacatatatagtgaaaatcaaagtcacactcac |
18076907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 43159816 - 43159896
Alignment:
| Q |
216 |
gaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtggtgtcgctgttgaaggacgatgaa |
296 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||||| |
|
|
| T |
43159816 |
gaagaatctgttcctgatcaagaaaaacaagctatgaatgttggcgccaatacggtggagttgctgttgacggacgatgaa |
43159896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 43159692 - 43159745
Alignment:
| Q |
209 |
agcagctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgc |
262 |
Q |
| |
|
|||||| ||||| ||| ||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
43159692 |
agcagcagaagagtctgttcctgatcaagataaacaagctatgaatgttggcgc |
43159745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University