View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_high_1 (Length: 717)

Name: NF16105_high_1
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_high_1
NF16105_high_1
[»] chr7 (1 HSPs)
chr7 (10-700)||(26029137-26029833)


Alignment Details
Target: chr7 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 10 - 700
Target Start/End: Original strand, 26029137 - 26029833
Alignment:
10 gtgagatgaagagaagaaaggagttagaaagagaacacgtagactaaaatagaaaggaacgtgtctactatctagcatgcaaataggtatcatgttttgt 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
26029137 gtgagatgaagagaagaaaggagttaggaagagaacacgtagactaaaatagaaaggaacgtgtctactatctagcatgcaaataggtatcatgttttct 26029236  T
110 tactcaatgaactcctacatgtccgcttattccacaaagactctttggttataattatatcatatgattcacaagaaacaaattaacattatcttagaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26029237 tactcaatgaactcctacatgtccgcttattccacaaagactctttggttataattatatcatatgattcacaagaaacaaattaacattatcttagaaa 26029336  T
210 gcattgaatttattaaaaatggcacaaacagttaagccacatgaaccaaagacaaagtcatttgatcttttgagtggacatagcattcctgctattggat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
26029337 gcattgaatttattaaaaatggcacaaacagttaagccacatgaaccaaagacaaagtcatttgatctgttgagtggacatagcattcctgctattggat 26029436  T
310 taggcacatggaaatctggttcacaagctatcaattctgtcttcacagccattactgaggtaacttatgtaacatattgagattgagatcagtttttgag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26029437 taggcacatggaaatctggttcacaagctatcaattctgtcttcacagccattactgaggtaacttatgtaacatattgagattgagatcagtttttgag 26029536  T
410 aatcattatattattcatgatgaatattaatagttttttgtaaaatgaaaattttgaattttgtctctaggctggatatagacacattgacactgctgct 509  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
26029537 aatcattatattattcatgatgaatattaatag-tttttgtaaaatgaaaattttgaattttgtctttaggctggatatagacatattgacactgctgct 26029635  T
510 cagtatggagttcaagaagaggtatatatatcatatgctttctgtttcata-taagttttaatttgttgattctggatataaattaaaaaataaataaat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
26029636 cagtatggagttcaagaagaggtatatatatcatatgctttctgtttcatattaagttttaatttgttgattctggatataaattaaaaaataaataaat 26029735  T
609 ctgaattaatacgttactacaagattatagtatat-----taaagtgattagtttcatataaa-agatagatgatgaaccaacaatagaatgatccaa 700  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
26029736 ctgaattaatacgttactacaagattatagtatattaaagtaaagtgattagtttcatataaagagatagatgatgaaccaacaatagaatgatccaa 26029833  T

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