View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_high_13 (Length: 374)
Name: NF16105_high_13
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 28298372 - 28298720
Alignment:
| Q |
12 |
tcatcatgtcttgtcccatcattgtacctacctcttaaatatttcttcaccttcataattgttcagcggccccaactatatctttttctcccaataaata |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||||||| ||||||| |
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| T |
28298372 |
tcatcatgtcttgtcccatcattgtacctacctcttaaatatttcttcaccttcataactgttcagtggcccccactacatctttttctccctataaata |
28298471 |
T |
|
| Q |
112 |
ctaactttttacttcctcattttcacactactacatttcactctttcatatttacggttttccttagatttttcaatttgggctctttgttgtggaactt |
211 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
28298472 |
ctaactttttacttcctcattttcaccctactacatttcactctttcatatttacggttttccttagatttttcagtttgggctctttgtcgtggaactt |
28298571 |
T |
|
| Q |
212 |
cctccttgtcttactacacacaattcgactc---ctttatttcttcataggtaccagcttactttaatttgcatctcatatatatccttcatattttcat |
308 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28298572 |
cctccttgtcttactacacacaattcgactccttctttatttcttcataggtaccagcttactttcatttgcatctcatatatatccttcatattttcat |
28298671 |
T |
|
| Q |
309 |
tttcagtttggactctttcatatttaagttcctttatgttcctattacc |
357 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
28298672 |
tttcagtttggactgtttcatatttaagttcctttatgttcctgttacc |
28298720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 14513821 - 14513893
Alignment:
| Q |
14 |
atcatgtcttgtcccatcattgtacctacctcttaaatatttcttcaccttcataattgttcagcggccccaac |
87 |
Q |
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| T |
14513821 |
atcatgtcttgtcccatcattgtacc-acctcattaatacttctttaccttcataattgttcagcggccccaac |
14513893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 14487170 - 14487309
Alignment:
| Q |
14 |
atcatgtcttgtcccatcattgtacctacctcttaaatatttcttcaccttcataattgttcagcggccccaactatatc--------tttttctcccaa |
105 |
Q |
| |
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||||||||||||||||||||| |||| ||||| | ||| ||||| |||||||||||| |||| ||||||| || | | | |||| ||||| | |
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| T |
14487170 |
atcatgtcttgtcccatcattatacccacctcattaatgcttctttaccttcataattattcaacggcccccaccacaccctttattattttcctcccta |
14487269 |
T |
|
| Q |
106 |
taaatactaactttttacttcctcattttcacactactac |
145 |
Q |
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| T |
14487270 |
tatatactaactttttacctcctcattttcacactactac |
14487309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 17471303 - 17471158
Alignment:
| Q |
12 |
tcatcatgtcttgtcccatcattgtacctacctcttaaatatttcttcaccttcataattgttcagcggccccaactata--------tctttttctccc |
103 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||| | ||| || || |||||||||||||||| |||||||| || | | | |||| ||||| |
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| T |
17471303 |
tcatcttgtcttgtcccatcattatacccacctcattaatgcttatttaccttcataattgttcggcggcccccaccacaccctttattattttcctccc |
17471204 |
T |
|
| Q |
104 |
aataaatactaactttttacttcctcattttcacactactacattt |
149 |
Q |
| |
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||| ||||||||||||||| |||||||||||||| ||||||||| |
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| T |
17471203 |
tatatatactaactttttacctcctcattttcacatgactacattt |
17471158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 12600089 - 12600159
Alignment:
| Q |
14 |
atcatgtcttgtcccatcattgtacctacctcttaaatatttcttcaccttcataattgttcagcggcccc |
84 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| | |||| ||| | ||||||||||||||||||||||||| |
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| T |
12600089 |
atcatgtcttgtcccatcattgtatccatctcattaatacttccttaccttcataattgttcagcggcccc |
12600159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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