View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_high_14 (Length: 369)

Name: NF16105_high_14
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_high_14
NF16105_high_14
[»] chr2 (24 HSPs)
chr2 (20-271)||(11912883-11913134)
chr2 (280-355)||(11912571-11912646)
chr2 (141-267)||(21665829-21665963)
chr2 (147-271)||(11952731-11952863)
chr2 (125-267)||(16227497-16227651)
chr2 (176-267)||(38400672-38400771)
chr2 (185-267)||(37182553-37182643)
chr2 (178-267)||(29694260-29694357)
chr2 (153-267)||(13800674-13800795)
chr2 (217-262)||(10252330-10252375)
chr2 (147-267)||(24035674-24035802)
chr2 (175-267)||(12134169-12134268)
chr2 (222-267)||(27506845-27506890)
chr2 (19-69)||(37182379-37182429)
chr2 (222-267)||(8327618-8327663)
chr2 (18-71)||(21666041-21666094)
chr2 (120-194)||(37622531-37622609)
chr2 (29-73)||(11952952-11952996)
chr2 (32-71)||(21190934-21190973)
chr2 (32-71)||(30175538-30175577)
chr2 (32-71)||(45156355-45156394)
chr2 (29-71)||(29694100-29694142)
chr2 (222-267)||(10762670-10762715)
chr2 (222-267)||(24410388-24410433)
[»] chr7 (23 HSPs)
chr7 (139-271)||(27237547-27237687)
chr7 (124-266)||(23020611-23020765)
chr7 (147-263)||(7398297-7398421)
chr7 (139-267)||(23858912-23859047)
chr7 (139-267)||(12419623-12419761)
chr7 (156-271)||(26917806-26917929)
chr7 (217-267)||(17800349-17800399)
chr7 (139-240)||(20153041-20153150)
chr7 (222-267)||(23551175-23551220)
chr7 (222-267)||(25010386-25010431)
chr7 (18-71)||(27237765-27237818)
chr7 (222-267)||(38414980-38415025)
chr7 (19-71)||(7398162-7398214)
chr7 (224-271)||(18201069-18201116)
chr7 (222-265)||(19692047-19692090)
chr7 (18-76)||(2611450-2611508)
chr7 (222-263)||(8239638-8239679)
chr7 (222-267)||(20091385-20091430)
chr7 (222-267)||(24525789-24525834)
chr7 (29-74)||(26918028-26918073)
chr7 (222-267)||(40357462-40357507)
chr7 (222-267)||(47985074-47985119)
chr7 (18-74)||(23020815-23020871)
[»] chr4 (32 HSPs)
chr4 (139-267)||(36118585-36118721)
chr4 (153-270)||(40217087-40217212)
chr4 (139-267)||(37746849-37746984)
chr4 (139-267)||(52468129-52468265)
chr4 (157-271)||(2135442-2135564)
chr4 (141-267)||(15734941-15735075)
chr4 (178-271)||(36178554-36178656)
chr4 (139-267)||(27111874-27112009)
chr4 (222-267)||(16844979-16845024)
chr4 (222-267)||(38352359-38352404)
chr4 (139-215)||(39329592-39329668)
chr4 (188-259)||(45656069-45656147)
chr4 (222-269)||(16882497-16882544)
chr4 (175-267)||(36362998-36363098)
chr4 (222-269)||(37777325-37777372)
chr4 (217-271)||(4168016-4168070)
chr4 (217-267)||(30507200-30507250)
chr4 (217-263)||(39329524-39329570)
chr4 (222-267)||(19498462-19498507)
chr4 (222-267)||(32128542-32128587)
chr4 (222-267)||(34027537-34027582)
chr4 (222-267)||(35465065-35465110)
chr4 (222-267)||(40089474-40089519)
chr4 (19-71)||(36118806-36118858)
chr4 (222-266)||(54083347-54083391)
chr4 (18-61)||(5892817-5892860)
chr4 (32-71)||(24404217-24404256)
chr4 (32-73)||(22315813-22315854)
chr4 (222-267)||(24969395-24969440)
chr4 (226-271)||(29425297-29425342)
chr4 (176-223)||(24396817-24396862)
chr4 (231-271)||(51692041-51692081)
[»] chr3 (18 HSPs)
chr3 (135-267)||(52374501-52374635)
chr3 (138-264)||(42453252-42453386)
chr3 (139-267)||(26279381-26279517)
chr3 (217-267)||(29598035-29598085)
chr3 (217-267)||(28689489-28689539)
chr3 (222-267)||(44708433-44708478)
chr3 (217-270)||(49393018-49393071)
chr3 (222-267)||(34290741-34290786)
chr3 (222-267)||(43207342-43207387)
chr3 (222-267)||(53506989-53507034)
chr3 (222-267)||(54407262-54407307)
chr3 (217-267)||(8420253-8420303)
chr3 (217-267)||(36179629-36179679)
chr3 (18-71)||(23641471-23641524)
chr3 (29-74)||(26279260-26279305)
chr3 (222-266)||(27078675-27078719)
chr3 (222-266)||(27084472-27084516)
chr3 (219-267)||(54574956-54575004)
[»] chr6 (11 HSPs)
chr6 (123-271)||(20611611-20611771)
chr6 (139-267)||(2477713-2477848)
chr6 (222-267)||(19987117-19987162)
chr6 (19-71)||(20611510-20611562)
chr6 (217-271)||(30121701-30121755)
chr6 (222-267)||(27788793-27788838)
chr6 (237-271)||(4036895-4036929)
chr6 (222-267)||(17353910-17353955)
chr6 (222-267)||(28075739-28075784)
chr6 (222-263)||(34397813-34397854)
chr6 (222-262)||(235335-235375)
[»] chr5 (27 HSPs)
chr5 (147-264)||(11242447-11242572)
chr5 (139-267)||(2024766-2024902)
chr5 (153-241)||(2411941-2412037)
chr5 (153-257)||(24395590-24395702)
chr5 (121-215)||(34307320-34307418)
chr5 (217-271)||(15639570-15639624)
chr5 (217-271)||(34425827-34425881)
chr5 (126-266)||(40794452-40794604)
chr5 (153-217)||(10543534-10543598)
chr5 (166-267)||(14318510-14318619)
chr5 (139-217)||(26719080-26719158)
chr5 (139-217)||(26988824-26988902)
chr5 (217-266)||(7079556-7079605)
chr5 (222-267)||(7670877-7670922)
chr5 (18-71)||(11242659-11242712)
chr5 (222-267)||(16198896-16198941)
chr5 (222-267)||(28822444-28822489)
chr5 (222-267)||(38869465-38869510)
chr5 (178-217)||(15639331-15639370)
chr5 (32-71)||(24395464-24395503)
chr5 (217-251)||(10407382-10407416)
chr5 (188-217)||(1366710-1366739)
chr5 (18-71)||(1366852-1366905)
chr5 (13-74)||(36869565-36869625)
chr5 (222-267)||(40389638-40389683)
chr5 (218-266)||(33037704-33037752)
chr5 (29-77)||(34425622-34425670)
[»] chr8 (20 HSPs)
chr8 (139-267)||(15167542-15167678)
chr8 (139-268)||(15078598-15078735)
chr8 (142-271)||(34048832-34048969)
chr8 (153-267)||(41677302-41677425)
chr8 (139-267)||(8646038-8646174)
chr8 (217-271)||(25561631-25561685)
chr8 (217-266)||(5973235-5973284)
chr8 (222-267)||(10917344-10917389)
chr8 (224-267)||(8102845-8102888)
chr8 (217-267)||(7944651-7944701)
chr8 (217-267)||(11290108-11290158)
chr8 (175-266)||(30674507-30674606)
chr8 (18-72)||(38009489-38009543)
chr8 (222-267)||(23606734-23606779)
chr8 (222-267)||(23798366-23798411)
chr8 (222-267)||(34789991-34790036)
chr8 (222-267)||(42600735-42600780)
chr8 (222-267)||(45475770-45475815)
chr8 (43-71)||(5973369-5973397)
chr8 (19-71)||(7944774-7944826)
[»] chr1 (17 HSPs)
chr1 (120-267)||(39134851-39135008)
chr1 (153-271)||(26803812-26803938)
chr1 (153-217)||(10926130-10926194)
chr1 (222-267)||(1366982-1367027)
chr1 (222-267)||(13913586-13913631)
chr1 (29-71)||(39135070-39135112)
chr1 (222-267)||(9181109-9181154)
chr1 (222-267)||(19955681-19955726)
chr1 (222-267)||(44895616-44895661)
chr1 (222-266)||(17168920-17168964)
chr1 (217-267)||(5533246-5533296)
chr1 (229-263)||(45758439-45758473)
chr1 (222-267)||(4971722-4971767)
chr1 (222-267)||(9173127-9173172)
chr1 (222-267)||(23185391-23185436)
chr1 (222-267)||(34247012-34247057)
chr1 (222-267)||(40501894-40501939)
[»] scaffold1320 (1 HSPs)
scaffold1320 (139-268)||(1194-1331)
[»] scaffold0007 (1 HSPs)
scaffold0007 (153-267)||(230988-231110)
[»] scaffold0018 (1 HSPs)
scaffold0018 (175-263)||(173643-173739)
[»] scaffold0022 (2 HSPs)
scaffold0022 (217-267)||(40007-40057)
scaffold0022 (217-267)||(138067-138117)
[»] scaffold0097 (1 HSPs)
scaffold0097 (18-71)||(38799-38852)
[»] scaffold0039 (1 HSPs)
scaffold0039 (222-267)||(106491-106536)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 11913134 - 11912883
Alignment:
Q  20 ggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatgagtttcnnnnnnnnn-ttatagcgcagtagtgctaccccactnnnnnn 118  Q
    |||||||| ||||||||||||||||||||||| |||||||| | |||||||||  |||          ||||||| ||||||| |||||||||           
T  11913134 ggactttggggtgtgcaaagagttcaatggagttgggcctctctaaggtatgaacttcaaaaaaaatattatagcacagtagtactaccccacaaaaaaa 11913035  T
Q  119 ncaaattttcttattctctttct----gatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcc 214  Q
     ||||||||||||||||||||||    |||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||   |||  |   |||||      
T  11913034 acaaattttcttattctctttctctctgataccacgcattccatcatcataactccattgcactttccttttcttctttcct--tttcct---cttttgt 11912940  T
Q  215 tctcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11912939 tgtcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 11912883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 11912646 - 11912571
Alignment:
Q  280 gcaatgtataagtttaattagttcagattgaaaataatctgaatctattaataaattgaaagaaagaaatactagt 355  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11912646 gcaatgtataagtttaattagttcaaattgaaaataatccgaatctattaataaattgaaagaaagaaatactagt 11912571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 267
Target Start/End: Complemental strand, 21665963 - 21665829
Alignment:
Q  141 tgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggccta 232  Q
    ||||| ||||| |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||        |||||||||| | |||    
T  21665963 tgataccacgcgttccatcatcatcactccatcagactttccttttcttcttccccaatttgatttccttttcctcatctgttgtcttgttttatgtcta 21665864  T
Q  233 ttagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||| ||||| ||| |||||||||||    
T  21665863 ttagaattgggtcctcttgctttaggtgttaggtg 21665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 11952863 - 11952731
Alignment:
Q  147 cacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctattagaa 238  Q
    ||||| |||||||| ||| ||||||  || |||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||    
T  11952863 cacgcgttccatcaccatcactccaccgggctttccttttcttcttccccgatttgatttccttttcctcttccattgtcttgttttaggcctattagaa 11952764  T
Q  239 ttgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||| ||| ||||| ||| |||||||||||||||    
T  11952763 ttgagtcctcttgttttaggtgttaggtgagtg 11952731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 16227651 - 16227497
Alignment:
Q  125 tttcttattctctttct----gatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc---- 216  Q
    |||||||||||||||||    |||| ||||| || ||||| ||| ||||||| || |||||||||||||||||||| |||||||||| ||||||||        
T  16227651 tttcttattctctttctctctgataccacgcgtttcatcaccatcactccatcggcctttccttttcttcttccccgatttgatttctttttcctctttt 16227552  T
Q  217 ----tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
        |||||||||| | |||||||||||| ||||||||  |||||||||||||||    
T  16227551 gttgtcttgttttatgtctattagaattgagtcatcttacttttggtgttaggtg 16227497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 38400672 - 38400771
Alignment:
Q  176 actttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||| |||||||||||||||||||||||| |||||||| |        |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  38400672 actttcgttttcttcttccccaatttgattttcttttcctgttctgttgtcttgttttaggcctattagaatagggtcatcttgcttttggtgttaggtg 38400771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 37182553 - 37182643
Alignment:
Q  185 ttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  37182553 ttcttcttccccgatttgatttccttttcctcttctattgtcttgttttaggcctattagaattgggtcatcttgcttttgctgttaggtg 37182643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 29694260 - 29694357
Alignment:
Q  178 tttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||        |||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  29694260 tttccttttcttcttccccgatttgatttctttttcctcttctgttgtcttgttttagacctattagaattgggtcctcttgcttttggtgttaggtg 29694357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 13800795 - 13800674
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctctcttgt-------tttaggcctattagaattgggtc 245  Q
    |||||||| ||| ||||||| |||||||| ||||||||||| || |||||||||| |||||||||  |||       |||||||||||||||||||| ||    
T  13800795 ttccatcaccatcactccatcggactttcattttcttcttctccgatttgatttcattttcctcttctgttgtcttgtttaggcctattagaattggatc 13800696  T
Q  246 atcttgattttggtgttaggtg 267  Q
     ||||| |||||||||||||||    
T  13800695 ttcttgcttttggtgttaggtg 13800674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 10252330 - 10252375
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgtt 262  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  10252330 tcttgttttaggcctattagaattgggtcatcttgcttttggtgtt 10252375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 24035802 - 24035674
Alignment:
Q  147 cacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaa 238  Q
    ||||| ||| |||| ||| ||||||| | | |||| |||||||||||||  ||||||||||||||||||||        ||||||||||| |||||||||    
T  24035802 cacgcgttcgatcaccatcactccatcgaaatttcattttcttcttccctgatttgatttccttttcctcttctgttgtcttgttttaggtctattagaa 24035703  T
Q  239 ttgggtcatcttgattttggtgttaggtg 267  Q
    || |||| ||||| |||| ||||||||||    
T  24035702 ttaggtcctcttgcttttagtgttaggtg 24035674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 12134268 - 12134169
Alignment:
Q  175 gactttccttttcttcttccccaatttgatttccttttcctct-------cttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||| ||||| |||||||  || |||||||||||||||||       |||||||||||||||||||||||| ||  ||||| |||||||||||||||    
T  12134268 gactttctttttcatcttccctgatatgatttccttttcctcttctttgtcttgttttaggcctattagaattgagttctcttgcttttggtgttaggtg 12134169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 27506890 - 27506845
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  27506890 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 27506845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 37182379 - 37182429
Alignment:
Q  19 cggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggta 69  Q
    ||||| ||| ||||||||||||| ||||||||||||| |||||||||||||    
T  37182379 cggaccttggggtgtgcaaagagctcaatggagctggacctccccaaggta 37182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 8327618 - 8327663
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  8327618 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 8327663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 21666094 - 21666041
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    |||||| ||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  21666094 ccggaccttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatg 21666041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 37622609 - 37622531
Alignment:
Q  120 caaattttcttattctctttctg----atatcacgccttccatcatcataactccattggactttccttttcttcttcc 194  Q
    |||||||||||||| |||||||     ||| ||||| |||||||||||| |||||||  ||||||||||||||||||||    
T  37622609 caaattttcttattatctttctctctcataccacgcgttccatcatcatcactccatcagactttccttttcttcttcc 37622531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 11952996 - 11952952
Alignment:
Q  29 ggtgtgcaaagagttcaatggagctgggcctccccaaggtatgag 73  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||    
T  11952996 ggtgtgcaaggagctcaatggaactgggcctccccaaggtatgag 11952952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 21190973 - 21190934
Alignment:
Q  32 gtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  21190973 gtgcaaacagctcaatggagctgggcctccccaaggtatg 21190934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 30175538 - 30175577
Alignment:
Q  32 gtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  30175538 gtgcaaacagctcaatggagctgggcctccccaaggtatg 30175577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 45156394 - 45156355
Alignment:
Q  32 gtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  45156394 gtgcaaacagctcaatggagctgggcctccccaaggtatg 45156355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 29694100 - 29694142
Alignment:
Q  29 ggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||||||||||| |||||||||||||||||||  ||||||||    
T  29694100 ggtgtgcaaagagctcaatggagctgggcctccttaaggtatg 29694142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 10762715 - 10762670
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| |||||  ||||||||||||||    
T  10762715 ttttaggcctattagaattaggtcctcttgcatttggtgttaggtg 10762670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 24410388 - 24410433
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  24410388 ttttaggccaattagaattaggtcctcttgtttttggtgttaggtg 24410433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 27237687 - 27237547
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |||        ||||||||||||||    
T  27237687 tctgataccacgcgttccatcaccatcactccatcggactttccttttcttcttccccgatttgatttcctttttctcttttgttgtcttgttttaggcc 27237588  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  27237587 tattagaattgggtcatcttgcttatggtgttaggtgagtg 27237547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 23020765 - 23020611
Alignment:
Q  124 ttttcttattctctttct----gatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--- 216  Q
    ||||||||||||||||||    |||| ||||| |||||||| ||| | ||||| ||||||||||||||||||||||| |||||||||| ||||||||       
T  23020765 ttttcttattctctttctctctgataccacgcgttccatcaccatcattccatcggactttccttttcttcttccccgatttgatttctttttcctcttt 23020666  T
Q  217 -----tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
         ||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  23020665 tgttgtcttgttttagacctattagaattgggtcatattacttttggtgttaggt 23020611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 7398297 - 7398421
Alignment:
Q  147 cacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctattagaa 238  Q
    ||||| |||||||| ||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||| |||        ||||||||||||||||||||||    
T  7398297 cacgcgttccatcaacatcactccatcggactctccttttcttcatccccgatttgatttccttttgctcttttgttgtcttgttttaggcctattagaa 7398396  T
Q  239 ttgggtcatcttgattttggtgtta 263  Q
    ||||||| ||||| |||||||||||    
T  7398397 ttgggtcctcttgcttttggtgtta 7398421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 23858912 - 23859047
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||||||| ||| ||| |||  ||||| ||||||||||||||||||||||||||| ||||||||        ||||||||||||||    
T  23858912 tctgataccacgcgttccatcaccatcactgcatcagactt-ccttttcttcttccccaatttgatttcattttcctcttccgttatcttgttttaggcc 23859010  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||| |||||  ||||||||||||||    
T  23859011 tattagaattgggtcctcttgcatttggtgttaggtg 23859047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 12419761 - 12419623
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| || || |||||||| ||| ||||||| ||||||||||||| |||||| || |||||||||||||||||||        ||||||||||||||    
T  12419761 tctgataccatgcgttccatcaccatcactccatcggactttcctttttttcttctccgatttgatttccttttcctcgtcagttgtcttgttttaggcc 12419662  T
Q  231 tat--tagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||  |||||||||||| ||||| |||||||||||||||    
T  12419661 tattatagaattgggtcctcttgcttttggtgttaggtg 12419623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 26917929 - 26917806
Alignment:
Q  156 catcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggtcat 247  Q
    ||||| ||| |||||||  |||||| |||||| |||||||| |||||||||| |||||||||        |||||||||||| ||||||||||||||| |    
T  26917929 catcaccatcactccatcagactttacttttcatcttccccgatttgatttcattttcctcttctgttgtcttgttttaggcttattagaattgggtctt 26917830  T
Q  248 cttgattttggtgttaggtgagtg 271  Q
    |||| |||||||||||||||||||    
T  26917829 cttgcttttggtgttaggtgagtg 26917806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 17800399 - 17800349
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  17800399 tcttgttttaggcctattagaattgggtcctcttgcttttggtgttaggtg 17800349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 20153041 - 20153150
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||| | |||||||| ||| |||||||||||||||  |||||||||||||| |||||||||| |||| |||        ||||||||||||||    
T  20153041 tctgataccacacgttccatcaccatcactccattggactttgtttttcttcttccccgatttgatttcttttttctcatatgttgtcttgttttaggcc 20153140  T
Q  231 tattagaatt 240  Q
    ||||||||||    
T  20153141 tattagaatt 20153150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 23551220 - 23551175
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  23551220 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 23551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 25010386 - 25010431
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  25010386 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 25010431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 27237818 - 27237765
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||||  |||||||    
T  27237818 ccggactttggggtgtgcaaagagctcaatggagttgggcctccctgaggtatg 27237765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 38415025 - 38414980
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  38415025 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 38414980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7398162 - 7398214
Alignment:
Q  19 cggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||| ||| ||||||||| ||| |||||||||||| ||||||||||||||||    
T  7398162 cggaccttggggtgtgcaacgagctcaatggagctgagcctccccaaggtatg 7398214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 18201069 - 18201116
Alignment:
Q  224 ttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||| |||||||||||||||| ||||| |||| ||||||||||||||    
T  18201069 ttaggtctattagaattgggtcgtcttgctttttgtgttaggtgagtg 18201116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 19692047 - 19692090
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttagg 265  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||    
T  19692047 ttttaggcctattagaattaggtcctcttgcttttggtgttagg 19692090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 2611508 - 2611450
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatgagttt 76  Q
    |||||| ||| ||| ||||||||||||||||||| |||| |||| | ||||||||||||    
T  2611508 ccggaccttggggtttgcaaagagttcaatggagttgggtctcctcgaggtatgagttt 2611450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 8239638 - 8239679
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgtta 263  Q
    ||||||||||||||||||| |||| ||||| |||||||||||    
T  8239638 ttttaggcctattagaattaggtcctcttgcttttggtgtta 8239679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 20091430 - 20091385
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||  |||||||||||||||    
T  20091430 ttttaggcctattagaattaggtcctcttacttttggtgttaggtg 20091385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 24525834 - 24525789
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||| |||||||||| |||| ||||| |||||||||||||||    
T  24525834 ttttaggcatattagaattaggtcctcttgcttttggtgttaggtg 24525789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 26918073 - 26918028
Alignment:
Q  29 ggtgtgcaaagagttcaatggagctgggcctccccaaggtatgagt 74  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||    
T  26918073 ggtgtgcaaagagctcaatggagctgggcatctctaaggtatgagt 26918028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 40357507 - 40357462
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||  |||||||||| | ||||||||||||||||||||||||    
T  40357507 ttttaggattattagaattagttcatcttgattttggtgttaggtg 40357462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 47985119 - 47985074
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  47985119 ttttaggcctattagaattaggtcctcttgctttttgtgttaggtg 47985074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 23020871 - 23020815
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatgagt 74  Q
    |||||| || ||||||||||| || |||||||||  ||| |||||||||||||||||    
T  23020871 ccggacctttaggtgtgcaaatagctcaatggagacgggtctccccaaggtatgagt 23020815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 36118721 - 36118585
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||||| | ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||        |||| |||||||||    
T  36118721 tctgataccacgctttccattaccatcactccatcggactttccttttcttcttccccgatttgatttccttttcctcttctattgtcttcttttaggcc 36118622  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||||| |||||||||||||||    
T  36118621 tattagaattgggtcatcttgcttttggtgttaggtg 36118585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 40217087 - 40217212
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggt 244  Q
    |||||||| ||| |||||||  |||||||||||||||||||||| |||||||||| |||||||||        |||||||||||||||||||||||||||    
T  40217087 ttccatcaccatcactccatcagactttccttttcttcttccccgatttgatttctttttcctcttttgttgtcttgttttaggcctattagaattgggt 40217186  T
Q  245 catcttgattttggtgttaggtgagt 270  Q
    ||| ||| ||||||||||||||||||    
T  40217187 cattttgcttttggtgttaggtgagt 40217212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 37746984 - 37746849
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcc 230  Q
    ||||||| ||||| | |||||| ||| ||||||| |||||||||||||||||||||| | ||||||||| |||||||||        |||||||||||||    
T  37746984 tctgataccacgcataccatcaccatcactccatcggactttccttttcttcttcccga-tttgatttctttttcctcttctgttgtcttgttttaggcc 37746886  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||||| |||||||||||||||    
T  37746885 tattagaattgggtcatcttgcttttggtgttaggtg 37746849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 52468129 - 52468265
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||||||| ||| |||||||  |||||||||||| ||||||||| |||| ||||||||||||||        ||||||||||||||    
T  52468129 tctgataccacgcgttccatcaccatcactccatcagactttcctttttttcttccccgatttcatttccttttcctcttatgttgtcttgttttaggcc 52468228  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||| ||| ||||| |||||| ||||||||    
T  52468229 tattagaattgagtcctcttgtttttggcgttaggtg 52468265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 2135564 - 2135442
Alignment:
Q  157 atcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggtcatc 248  Q
    |||||||| |||||||  |||||||||||||||||||||| |||||||||| |||| ||||        |||||||||||| ||||||||||||||| ||    
T  2135564 atcatcatcactccatcagactttccttttcttcttccccgatttgatttcatttttctcttttgttatcttgttttaggcttattagaattgggtcctc 2135465  T
Q  249 ttgattttggtgttaggtgagtg 271  Q
    ||| |||||||||||||| ||||    
T  2135464 ttgcttttggtgttaggtcagtg 2135442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 15734941 - 15735075
Alignment:
Q  141 tgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggccta 232  Q
    ||||| ||||| ||||||||  || ||| |||||||| ||| ||||||||||| || ||||||||||||||||||||        ||||||||||||||     
T  15734941 tgataccacgcgttccatcactatcacttcattggacattcgttttcttcttctccgatttgatttccttttcctcttctgttcacttgttttaggcctg 15735040  T
Q  233 ttagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||| ||||| |||||||||||||||    
T  15735041 ttagaattgggtcttcttgcttttggtgttaggtg 15735075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 36178554 - 36178656
Alignment:
Q  178 tttccttttcttcttccccaatttgatttccttttcctct---------cttgttttaggcctattagaattgggtcatcttgattttggtgttaggtga 268  Q
    ||||||||||||||||||  |||||||||| |||||||||         ||||||||||||| |||||||| ||||| ||||| ||||||||||||||||    
T  36178554 tttccttttcttcttccctgatttgatttcattttcctcttcccgttgtcttgttttaggcccattagaatcgggtcctcttgcttttggtgttaggtga 36178653  T
Q  269 gtg 271  Q
    |||    
T  36178654 gtg 36178656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 27111874 - 27112009
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||| ||| ||| ||||| |  ||||||||||||||||||| |  |||||||||||||||||||        |||||||||| |||    
T  27111874 tctgataccacgctttccttcaccatcactccgtcagactttccttttcttcttctctgatttgatttccttttcctcttttgttttcttgtttta-gcc 27111972  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||| ||| ||||| |||| ||||||||||    
T  27111973 tattagaattgagtcctcttgctttttgtgttaggtg 27112009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 16844979 - 16845024
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  16844979 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 16845024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 38352404 - 38352359
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  38352404 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 38352359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 39329668 - 39329592
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcct 215  Q
    ||||||| ||||| ||| |||||||| |||| ||  ||||||||||||||||||||   ||||||||||||||||||    
T  39329668 tctgataccacgcgttctatcatcatcactcaatcagactttccttttcttcttccatgatttgatttccttttcct 39329592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 45656069 - 45656147
Alignment:
Q  188 ttcttccccaatttgatttccttttcctct-------cttgttttaggcctattagaattgggtcatcttgattttggt 259  Q
    |||||||||||||||||||| |||||||||       |||||||||||||||||||||||| ||||||||  |||||||    
T  45656069 ttcttccccaatttgatttctttttcctctttgttgtcttgttttaggcctattagaattgagtcatctttgttttggt 45656147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 16882544 - 16882497
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtgag 269  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  16882544 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtgag 16882497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 36363098 - 36362998
Alignment:
Q  175 gactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    |||||| ||||||||||||||  |||||||||| |||||||||        |||||||||| ||||||||||||| ||||||| | |||||||||| |||    
T  36363098 gacttttcttttcttcttccctgatttgatttcattttcctcttcagttgtcttgttttagacctattagaattgagtcatctcgcttttggtgttgggt 36362999  T
Q  267 g 267  Q
    |    
T  36362998 g 36362998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 37777372 - 37777325
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtgag 269  Q
    ||||||||||||||||||| |||||||||| |||||||||||| ||||    
T  37777372 ttttaggcctattagaattaggtcatcttgcttttggtgttagttgag 37777325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 4168070 - 4168016
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||||||||||||||||| |||   ||||||||| |||||||||||||||||||    
T  4168070 tcttgttttaggcctattaaaatatagtcatcttggttttggtgttaggtgagtg 4168016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 30507250 - 30507200
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||| ||||||| ||| ||||| |||||||||||||||    
T  30507250 tcttgttttaggcctataagaattgagtcctcttgcttttggtgttaggtg 30507200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 39329570 - 39329524
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgtta 263  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||    
T  39329570 tcttgttttaggcctattagaatttggtcttcttgcttttggtgtta 39329524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 19498462 - 19498507
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  19498462 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 19498507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 32128542 - 32128587
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  32128542 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 32128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 34027537 - 34027582
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  34027537 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 34027582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 35465065 - 35465110
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||| ||| |||||||||||||||    
T  35465065 ttttaggcctattagaattaggtcatgttgcttttggtgttaggtg 35465110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 40089474 - 40089519
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  40089474 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 40089519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 36118858 - 36118806
Alignment:
Q  19 cggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||||||||||||| ||||||| |||||||||||  ||||| ||||||||||    
T  36118858 cggactttgaggtgtacaaagagctcaatggagctacgcctctccaaggtatg 36118806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 54083391 - 54083347
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||    
T  54083391 ttttaggcctattagaattaggtcctcttgcttttggtgttaggt 54083347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5892817 - 5892860
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctcc 61  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    
T  5892817 ccggaccttgaggtgtgcaaacagttcaatggagctaggcctcc 5892860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 24404217 - 24404256
Alignment:
Q  32 gtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  24404217 gtgcaaacagctcaatggagctgggcctccccaaggtatg 24404256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 22315854 - 22315813
Alignment:
Q  32 gtgcaaagagttcaatggagctgggcctccccaaggtatgag 73  Q
    ||||||| || ||||||||||||| |||||||||||||||||    
T  22315854 gtgcaaacagctcaatggagctggacctccccaaggtatgag 22315813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 24969395 - 24969440
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| | || ||||| |||||||||||||||    
T  24969395 ttttaggcctattagaattagatcctcttgcttttggtgttaggtg 24969440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 29425342 - 29425297
Alignment:
Q  226 aggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||||||||||||||||| |||||  |||| ||||||||||||||    
T  29425342 aggcctattagaattgggttatcttactttttgtgttaggtgagtg 29425297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 24396817 - 24396862
Alignment:
Q  176 actttccttttcttcttccccaatttgatttccttttcctctcttgtt 223  Q
    ||||| |||||||||||||  ||||||||||||||||||||| |||||    
T  24396817 acttttcttttcttcttcc--aatttgatttccttttcctcttttgtt 24396862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 51692081 - 51692041
Alignment:
Q  231 tattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    |||||||||||| |||||||| |||| ||||||||||||||    
T  51692081 tattagaattggatcatcttgcttttagtgttaggtgagtg 51692041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 52374501 - 52374635
Alignment:
Q  135 tctttctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttc--ctctcttgttttaggccta 232  Q
    ||||||||||| ||||| |||||||| ||| |||  ||  |||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||    
T  52374501 tctttctgataccacgcgttccatcaccatcactttatcagactttccttttcttcttccccaatttgatttccttttctgttgtcttgttttaggccta 52374600  T
Q  233 ttagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||| ||| ||||| |||||||||||||||    
T  52374601 ttagaattgagtcctcttgcttttggtgttaggtg 52374635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 42453252 - 42453386
Alignment:
Q  138 ttctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggc 229  Q
    |||| ||| ||||| |||||||| ||| |||| ||  |||||||||||||||||||||| |||||||||||||||| ||        |||||||||||||    
T  42453252 ttctcataccacgcgttccatcaccatcactctatcagactttccttttcttcttccccgatttgatttccttttcttcttctgttgtcttgttttaggc 42453351  T
Q  230 ctattagaattgggtcatcttgattttggtgttag 264  Q
    |||||||||||| ||| ||||  ||||||||||||    
T  42453352 ctattagaattgagtcctcttacttttggtgttag 42453386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 26279381 - 26279517
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcc 230  Q
    ||||||| ||| | |||||||| ||| ||||||    ||||||||||||||| ||||| |||||||||| |||||||||        |||||||||||||    
T  26279381 tctgataccacacgttccatcaccatcactccaacaaactttccttttcttcatccccgatttgatttcattttcctcttctattgtcttgttttaggcc 26279480  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||| ||||||||||| ||| |||||||||||||||    
T  26279481 tattaaaattgggtcatgttgcttttggtgttaggtg 26279517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 29598035 - 29598085
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29598035 tcttgttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 29598085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 28689539 - 28689489
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  28689539 tcttgttttaagcctattagaattggatcatcttgcttttggtgttaggtg 28689489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 44708433 - 44708478
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  44708433 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 44708478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 49393018 - 49393071
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagt 270  Q
    |||||||||||||||||||||||| |||| ||||  ||||||||||||||||||    
T  49393018 tcttgttttaggcctattagaattaggtcctcttacttttggtgttaggtgagt 49393071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 34290786 - 34290741
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  34290786 ttttaggcctattagaattaggtcctcttgtttttggtgttaggtg 34290741  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 43207387 - 43207342
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  43207387 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 43207342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 53507034 - 53506989
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  53507034 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 53506989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 54407307 - 54407262
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  54407307 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 54407262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 8420253 - 8420303
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||| |||||||| ||||||||||||||  ||||| |||||||||||||||    
T  8420253 tcttattttaggcatattagaattgggttctcttgcttttggtgttaggtg 8420303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 36179679 - 36179629
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||| |||||||||||||||| || ||||| ||||||||| |||||    
T  36179679 tcttgttttcggcctattagaattggatcctcttgcttttggtgtcaggtg 36179629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 23641524 - 23641471
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    |||||||||| ||||||||||  | |||||||| | ||||||||||||||||||    
T  23641524 ccggactttggggtgtgcaaaccgctcaatggaaccgggcctccccaaggtatg 23641471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 26279260 - 26279305
Alignment:
Q  29 ggtgtgcaaagagttcaatggagctgggcctccccaaggtatgagt 74  Q
    ||||||||| ||| ||| |||||||||||||||||| |||||||||    
T  26279260 ggtgtgcaaggagctcactggagctgggcctccccagggtatgagt 26279305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 27078719 - 27078675
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    |||||||  |||||||||| | |||||||||||||||||||||||    
T  27078719 ttttaggattattagaattagttcatcttgattttggtgttaggt 27078675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 27084516 - 27084472
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    |||||||  |||||||||| | |||||||||||||||||||||||    
T  27084516 ttttaggattattagaattagttcatcttgattttggtgttaggt 27084472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 54575004 - 54574956
Alignment:
Q  219 ttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||| ||||||||||| ||||||||  ||||| |||||||||    
T  54575004 ttgttttaggcatattagaattgagtcatcttacttttgttgttaggtg 54574956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 20611611 - 20611771
Alignment:
Q  123 attttcttattctctttct----gatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc-- 216  Q
    ||||| |||||||||||||    ||||||| || |||||||| |||  ||||||  |||||||||||||||||||||| |||||||||| ||||||||      
T  20611611 atttttttattctctttctctatgatatcaagcgttccatcaccattgctccatcagactttccttttcttcttccccgatttgatttctttttcctctt 20611710  T
Q  217 ------tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
          ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  20611711 ttgttgtcttgttttaggcctattagaattgggtcattttacttttggtgttaggtgagtg 20611771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 2477848 - 2477713
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||| ||| ||| ||||| |  ||||||||||||||||||| |  |||||||||||||||||||        |||||||||| |||    
T  2477848 tctgataccacgctttccttcaccatcactccgtcagactttccttttcttcttctctgatttgatttccttttcctcttttgttttcttgtttta-gcc 2477750  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||| ||| ||||| |||| ||||||||||    
T  2477749 tattagaattgagtcctcttgctttttgtgttaggtg 2477713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 19987117 - 19987162
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  19987117 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 19987162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 20611510 - 20611562
Alignment:
Q  19 cggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  20611510 cggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatg 20611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 30121701 - 30121755
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    |||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||    
T  30121701 tcttgttttaggtctattagaatcgggtcctcttgcttttggtgttaagtgagtg 30121755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 27788838 - 27788793
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||    
T  27788838 ttttaggcctattaaaattaggtcatcttgcttttggtgttaggtg 27788793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 4036895 - 4036929
Alignment:
Q  237 aattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||||||||||||| |||||||||||||||||||    
T  4036895 aattgggtcatcttgcttttggtgttaggtgagtg 4036929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 17353910 - 17353955
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||| ||||||||||| |||| ||||| |||||||||||||||    
T  17353910 ttttaggtctattagaattaggtcctcttgcttttggtgttaggtg 17353955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 28075739 - 28075784
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||| ||||||||||||| |||| ||||| |||||||||||||||    
T  28075739 ttttatgcctattagaattaggtcctcttgtttttggtgttaggtg 28075784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 34397813 - 34397854
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgtta 263  Q
    ||||||||||||||||||| |||| ||||| |||||||||||    
T  34397813 ttttaggcctattagaattaggtcttcttgcttttggtgtta 34397854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 235375 - 235335
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgtt 262  Q
    ||||||||||||||||||| |||| ||||| ||||||||||    
T  235375 ttttaggcctattagaattaggtcctcttgcttttggtgtt 235335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 11242572 - 11242447
Alignment:
Q  147 cacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctattagaa 238  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||        | |||||||| |||||||||||    
T  11242572 cacgcgttccatcatcatcactccaatggactttccttttcttcttccccgattcgatttccttttcctcttctcttgttttgttttatgcctattagaa 11242473  T
Q  239 ttgggtcatcttgattttggtgttag 264  Q
    ||||||| ||||| ||||||||||||    
T  11242472 ttgggtcctcttgcttttggtgttag 11242447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 2024902 - 2024766
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| | ||| |||||||| ||| |||||||  |||||||||||||||||||||| |||||||||||||||||||        |||||||||||||     
T  2024902 tctgataccgcgcgttccatcaccatcactccatctgactttccttttcttcttccccgatttgatttccttttcctcttatgttgtcttgttttaggca 2024803  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||| ||| ||||| |||||||||||||||    
T  2024802 tattagaattgagtcctcttgcttttggtgttaggtg 2024766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 2411941 - 2412037
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctattagaattg 241  Q
    |||||||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  2411941 ttccatcaccatcactccatcagactttccttttcttcttccccaatttgatttccttttcctcttatgttgtcttgttttaggcctattagaattg 2412037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 24395590 - 24395702
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggt 244  Q
    |||||||| ||| |||||||  |||||||||||||||||||||| ||||||||||||||||||||        |||||||||  ||||||||||||| ||    
T  24395590 ttccatcaccatcactccatcagactttccttttcttcttccccgatttgatttccttttcctcttatgttgccttgttttatacctattagaattgagt 24395689  T
Q  245 catcttgattttg 257  Q
    ||||||| |||||    
T  24395690 catcttgcttttg 24395702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 34307418 - 34307320
Alignment:
Q  121 aaattttcttattctctttct----gatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcct 215  Q
    |||||||||||||||||||||    |||| |||   |||||||| ||| ||||||| |||||||||||||||||||| || ||||||||||||||||||    
T  34307418 aaattttcttattctctttctctctgataccacatgttccatcaccatcactccatcggactttccttttcttcttctccgatttgatttccttttcct 34307320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 15639570 - 15639624
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  15639570 tcttgttttaggcctattagaattgggtcctcttacttttggtgttaggtgagtg 15639624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 34425827 - 34425881
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  34425827 tcttgttttaggcctattagaattgagtcctcttgcttttggtgttaggtgagtg 34425881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 40794604 - 40794452
Alignment:
Q  126 ttcttattctctttct----gatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct---- 217  Q
    ||||||||||||||||    |||| ||||| |||||| | ||| | |||||   ||||||||||||||||||||  |||||||||| |||||||||        
T  40794604 ttcttattctctttctctttgataccacgcgttccattaccatcattccatcaaactttccttttcttcttcccggatttgatttctttttcctcttttg 40794505  T
Q  218 ----cttgttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
        |||||||||||| ||||||||||||||| ||||  ||||||||||||||    
T  40794504 ttgtcttgttttaggcttattagaattgggtcctcttacttttggtgttaggt 40794452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 10543534 - 10543598
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct 217  Q
    |||||||||||| ||||| | ||||||||||||| ||||| ||| ||||||||||||||||||||    
T  10543534 ttccatcatcatcactccgtcggactttccttttattctttcccgatttgatttccttttcctct 10543598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 14318619 - 14318510
Alignment:
Q  166 actccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctattagaattgggtcatcttgattttg 257  Q
    |||||||  ||||||| ||||||||||| || |||||||||||||||||||        | ||||||||||||||||| || |||||| ||||| |||||    
T  14318619 actccatcagactttcgttttcttcttctccgatttgatttccttttcctcttttgtagttttgttttaggcctattaaaactgggtcctcttgcttttg 14318520  T
Q  258 gtgttaggtg 267  Q
    || |||||||    
T  14318519 gtcttaggtg 14318510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 26719158 - 26719080
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct 217  Q
    ||||||| ||||| |||||||| ||| ||| ||| | ||||||||||||||||| ||  |||||||||| |||||||||    
T  26719158 tctgataccacgcgttccatcaccatcactgcatcgaactttccttttcttctttcctgatttgatttcattttcctct 26719080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 26988902 - 26988824
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct 217  Q
    ||||||| ||||| |||||||| ||| ||| ||| | ||||||||||||||||| ||  |||||||||| |||||||||    
T  26988902 tctgataccacgcgttccatcaccatcactgcatcgaactttccttttcttctttcctgatttgatttcattttcctct 26988824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 7079556 - 7079605
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    ||||||||||| |||||||||||| |||||||||| ||||| ||||||||    
T  7079556 tcttgttttagacctattagaattaggtcatcttgcttttgatgttaggt 7079605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 7670877 - 7670922
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  7670877 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 7670922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 11242712 - 11242659
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    |||||| ||||||||||||| |||||||||||| || |||||| ||||||||||    
T  11242712 ccggaccttgaggtgtgcaaggagttcaatggaacttggcctctccaaggtatg 11242659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 16198941 - 16198896
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  16198941 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 16198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 28822489 - 28822444
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  28822489 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 28822444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 38869510 - 38869465
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  38869510 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 38869465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 15639331 - 15639370
Alignment:
Q  178 tttccttttcttcttccccaatttgatttccttttcctct 217  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  15639331 tttccctttcttcttccccgatttgatttccttttcctct 15639370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 24395464 - 24395503
Alignment:
Q  32 gtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  24395464 gtgcaaagagctcaatggagctaggcctccccaaggtatg 24395503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 10407382 - 10407416
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttg 251  Q
    ||||||||||||||||||||||||||||| |||||    
T  10407382 tcttgttttaggcctattagaattgggtcctcttg 10407416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 1366739 - 1366710
Alignment:
Q  188 ttcttccccaatttgatttccttttcctct 217  Q
    ||||||||||||||||||||||||||||||    
T  1366739 ttcttccccaatttgatttccttttcctct 1366710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 1366905 - 1366852
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    |||| ||||| |||| |||||||| |||||||||||||||||| ||||| ||||    
T  1366905 ccgggctttggggtgagcaaagagctcaatggagctgggcctctccaagatatg 1366852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 36869625 - 36869565
Alignment:
Q  13 taggaccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatgagt 74  Q
    |||| |||||||||| || |||||||||| ||||||||| |||| || ||||||||||||||    
T  36869625 tagggccggactttgggg-gtgcaaagagctcaatggagttgggacttcccaaggtatgagt 36869565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 40389683 - 40389638
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  40389683 ttttaggcctattagaattaggtcctcttgcttttagtgttaggtg 40389638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 33037704 - 33037752
Alignment:
Q  218 cttgttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    ||||||||| |||||  ||||||||||| ||||| ||||||||||||||    
T  33037704 cttgttttaagcctagaagaattgggtcctcttgcttttggtgttaggt 33037752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 34425622 - 34425670
Alignment:
Q  29 ggtgtgcaaagagttcaatggagctgggcctccccaaggtatgagtttc 77  Q
    ||||||||||||| ||||| || ||||| || |||||||||||||||||    
T  34425622 ggtgtgcaaagagctcaattgaactgggtcttcccaaggtatgagtttc 34425670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 15167678 - 15167542
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||||||| ||| |||| ||  ||||||||||||||||||| || |||||||||||||||||||        ||||||||||||||    
T  15167678 tctgataccacgcgttccatcaccatcactctatcagactttccttttcttcttctccgatttgatttccttttcctcttctgttgtcttgttttaggcc 15167579  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||| ||||  |||||||||||||||    
T  15167578 tattagaattgggtcctcttacttttggtgttaggtg 15167542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 15078598 - 15078735
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||||||| ||| |||| ||  ||||||| ||||||||||| || |||||||||||||||||||        ||||||||||||||    
T  15078598 tctgataccacgcgttccatcaccatcactctatcagactttcattttcttcttctccgatttgatttccttttcctcttctgttgtcttgttttaggcc 15078697  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtga 268  Q
    | ||||||||||||| ||||  ||||||||||||||||    
T  15078698 tgttagaattgggtcctcttacttttggtgttaggtga 15078735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 34048969 - 34048832
Alignment:
Q  142 gatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctat 233  Q
    |||| ||||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||        ||||||  |||||||||    
T  34048969 gataccacgcgttccatcaccatcactccatcggactttccttttcttcttccccgatttgatttccttttcctcttctgttgtcttgtgctaggcctat 34048870  T
Q  234 tagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    |||||| | | ||| ||  |||||||||||||||||||    
T  34048869 tagaatcgagccattttacttttggtgttaggtgagtg 34048832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 41677425 - 41677302
Alignment:
Q  153 ttccatcatcataactccattggactttcctttt-cttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattggg 243  Q
    |||||||| ||| ||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||||        |||||||||||||||||||||| |||    
T  41677425 ttccatcaccatcactacattgaacttttctttttcttcttccccgatttgatttccttttcctcttatgttgtcttgttttaggcctattagaatcggg 41677326  T
Q  244 tcatcttgattttggtgttaggtg 267  Q
    || ||||| |||||||||||||||    
T  41677325 tcctcttgcttttggtgttaggtg 41677302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 8646038 - 8646174
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcc 230  Q
    ||||||| ||||| || |||||  || |||||||   |||||| |||||||||||||  ||||||||||||||||||||        |||||||||||||    
T  8646038 tctgataccacgcgtttcatcactatcactccatcatactttcattttcttcttccctgatttgatttccttttcctcttatgttgtcttgttttaggcc 8646137  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||| ||||| |||||||||| |||||||||||||||    
T  8646138 tattcgaattaggtcatcttgcttttggtgttaggtg 8646174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 25561685 - 25561631
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtg 271  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  25561685 tcttgttttaggcctattagaattgggtcctcttgcttttggtgttaggtgagtg 25561631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 5973284 - 5973235
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  5973284 tcttgttttaggtctattagaattggatcatcttgcttttggtgttaggt 5973235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 10917344 - 10917389
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  10917344 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 10917389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 8102845 - 8102888
Alignment:
Q  224 ttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||||||||||||||||| ||||| |||||||||||||||    
T  8102845 ttaggcctattagaattgggtcctcttgcttttggtgttaggtg 8102888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 7944701 - 7944651
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| ||||| ||| ||||| |||||||||||||||    
T  7944701 tcttgttttaggcctattaaaattgtgtcctcttgcttttggtgttaggtg 7944651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 11290108 - 11290158
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||||||||||||| | ||| ||||||| |||||||    
T  11290108 tcttgttttaggcctattagaattgggtcctgttgcttttggtattaggtg 11290158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 30674606 - 30674507
Alignment:
Q  175 gactttccttttcttcttccccaatttgatttccttttcctctc--------ttgttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    ||||||| |||||||||||| |||||||||||||||||  ||||        |||||||||| ||||| |||||||||  ||||| ||||||||||||||    
T  30674606 gactttcattttcttcttcctcaatttgatttcctttttatctcccattgtcttgttttaggtctatttgaattgggttctcttgcttttggtgttaggt 30674507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 38009543 - 38009489
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatga 72  Q
    |||||| ||| |||||| |||||| |||||||||||| |||||||||||||||||    
T  38009543 ccggaccttggggtgtgtaaagagctcaatggagctgagcctccccaaggtatga 38009489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 23606779 - 23606734
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  23606779 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 23606734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 23798411 - 23798366
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  23798411 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 23798366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 34790036 - 34789991
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||    
T  34790036 ttttaggcatattagaattgggtcatcttacttttggtgttaggtg 34789991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 42600735 - 42600780
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  42600735 ttttaggcctattagaattaggtcttcttgcttttggtgttaggtg 42600780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 45475770 - 45475815
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| | || ||||| |||||||||||||||    
T  45475770 ttttaggcctattagaattagttcctcttgcttttggtgttaggtg 45475815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 5973397 - 5973369
Alignment:
Q  43 tcaatggagctgggcctccccaaggtatg 71  Q
    |||||||||||||||||||||||||||||    
T  5973397 tcaatggagctgggcctccccaaggtatg 5973369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7944826 - 7944774
Alignment:
Q  19 cggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||| ||| ||||||||||  |||||||||| |||||| |||||||||||||    
T  7944826 cggaccttggggtgtgcaaaccgttcaatggaactgggcttccccaaggtatg 7944774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 267
Target Start/End: Complemental strand, 39135008 - 39134851
Alignment:
Q  120 caaattttcttattct--ctttctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc- 216  Q
    ||||||| ||||||||  || ||||||| || || |||||||| ||| |||||||  || ||||||||||||||||||| ||||||||| |||||||||     
T  39135008 caaatttccttattctttctctctgataccatgcgttccatcaccatcactccatcagattttccttttcttcttccccgatttgattttcttttcctct 39134909  T
Q  217 -------tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
           |||||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  39134908 tctgttgtcttgttttaagcctattagaattgggtcctcttgcttttggtgttaggtg 39134851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 26803812 - 26803938
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct--------cttgttttaggcctattagaattgggt 244  Q
    |||||||| ||| |||||||  |||||| ||||||||||| ||| |||||||||| |||||||||        |||||||||| ||||||||||||| ||    
T  26803812 ttccatcaccatcactccatcagacttttcttttcttctttcccgatttgatttctttttcctcttctgttgtcttgttttagtcctattagaattgagt 26803911  T
Q  245 catcttgattttggtgttaggtgagtg 271  Q
     |||||| |||||||||||||||||||    
T  26803912 tatcttgcttttggtgttaggtgagtg 26803938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 10926194 - 10926130
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctct 217  Q
    |||||||| ||| |||||||  ||||||||||||||||||| || ||||||||||||||||||||    
T  10926194 ttccatcaccatcactccatcagactttccttttcttcttctccgatttgatttccttttcctct 10926130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 1367027 - 1366982
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  1367027 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 1366982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 13913631 - 13913586
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  13913631 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtg 13913586  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 39135112 - 39135070
Alignment:
Q  29 ggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  39135112 ggtgtgcaaagagctcaatggaactgggcctccccaaggtatg 39135070  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 9181154 - 9181109
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  9181154 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 9181109  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 19955681 - 19955726
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  19955681 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 19955726  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 44895616 - 44895661
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  44895616 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtg 44895661  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 17168920 - 17168964
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggt 266  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||    
T  17168920 ttttaggcctattagaattaggtcttcttgcttttggtgttaggt 17168964  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 5533246 - 5533296
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||||| ||||||||||||||| || ||||| ||||| |||||||||    
T  5533246 tcttgttttacgcctattagaattggatcctcttgcttttgatgttaggtg 5533296  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 45758439 - 45758473
Alignment:
Q  229 cctattagaattgggtcatcttgattttggtgtta 263  Q
    ||||||||||||||||||||||| |||||||||||    
T  45758439 cctattagaattgggtcatcttgcttttggtgtta 45758473  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 4971767 - 4971722
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| | || ||||| |||||||||||||||    
T  4971767 ttttaggcctattagaattagttcctcttgcttttggtgttaggtg 4971722  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 9173172 - 9173127
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| |||| ||||  |||||||||||||||    
T  9173172 ttttaggcctattagaattaggtcctcttacttttggtgttaggtg 9173127  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 23185391 - 23185436
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||| | || ||||| |||||||||||||||    
T  23185391 ttttaggcctattagaattagttcctcttgcttttggtgttaggtg 23185436  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 34247012 - 34247057
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||  |||||||||| | ||||||||||||||||||||||||    
T  34247012 ttttaggattattagaattagttcatcttgattttggtgttaggtg 34247057  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 40501939 - 40501894
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||| ||||||||||| | |||||||| |||||||||||||||    
T  40501939 ttttaggtctattagaattagatcatcttgcttttggtgttaggtg 40501894  T

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Target: scaffold1320 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 1194 - 1331
Alignment:
Q  139 tctgatatcacgccttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcc 230  Q
    ||||||| ||||| |||||||| ||| |||| ||  ||||||| ||||||||||| || |||||||||||||||||||        ||||||||||||||    
T  1194 tctgataccacgcgttccatcaccatcactctatcagactttcattttcttcttctccgatttgatttccttttcctcttctgttgtcttgttttaggcc 1293  T
Q  231 tattagaattgggtcatcttgattttggtgttaggtga 268  Q
    | ||||||||||||| ||||  ||||||||||||||||    
T  1294 tgttagaattgggtcctcttacttttggtgttaggtga 1331  T

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Target: scaffold0007 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 231110 - 230988
Alignment:
Q  153 ttccatcatcataactccattggactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctattagaattgggt 244  Q
    |||||||| ||| |||||||  |||||||||||||||||||||  ||||||||||| |||||||        | ||||||||||||||||||||| ||||    
T  231110 ttccatcaacatcactccatcagactttccttttcttcttccctgatttgatttccctttcctcttttgttatattgttttaggcctattagaatcgggt 231011  T
Q  245 catcttgattttggtgttaggtg 267  Q
    | ||||| |||||||||||||||    
T  231010 cctcttgcttttggtgttaggtg 230988  T

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Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 173739 - 173643
Alignment:
Q  175 gactttccttttcttcttccccaatttgatttccttttcctc--------tcttgttttaggcctattagaattgggtcatcttgattttggtgtta 263  Q
    |||||||||||||||||||||  |||||||||||||||||||        ||| ||||||||||||||||||||| | | ||||| |||||||||||    
T  173739 gactttccttttcttcttccctgatttgatttccttttcctcttctgttgtctagttttaggcctattagaattgagacctcttgcttttggtgtta 173643  T

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Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 40007 - 40057
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  40007 tcttgttttaggcctattagaattgggtcctcttgctttttgtgttaggtg 40057  T

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Target: scaffold0022; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 138067 - 138117
Alignment:
Q  217 tcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  138067 tcttgttttaggcctattagaattgggtcctcttgctttttgtgttaggtg 138117  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 38799 - 38852
Alignment:
Q  18 ccggactttgaggtgtgcaaagagttcaatggagctgggcctccccaaggtatg 71  Q
    |||||||||| ||||||||| |||||||||||| ||||| || |||||||||||    
T  38799 ccggactttggggtgtgcaaggagttcaatggaactgggtcttcccaaggtatg 38852  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 106491 - 106536
Alignment:
Q  222 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 267  Q
    |||||||||||||||| || |||| ||||| |||||||||||||||    
T  106491 ttttaggcctattagatttaggtcctcttgcttttggtgttaggtg 106536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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