View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_high_17 (Length: 321)

Name: NF16105_high_17
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_high_17
NF16105_high_17
[»] chr2 (3 HSPs)
chr2 (9-306)||(7435983-7436280)
chr2 (75-306)||(7524875-7525106)
chr2 (76-251)||(7519695-7519871)
[»] scaffold0129 (3 HSPs)
scaffold0129 (214-281)||(34446-34513)
scaffold0129 (210-281)||(18046-18117)
scaffold0129 (204-281)||(9541-9618)
[»] chr4 (4 HSPs)
chr4 (199-265)||(9603475-9603541)
chr4 (199-265)||(37894933-37894999)
chr4 (210-281)||(48742877-48742948)
chr4 (199-244)||(9573469-9573514)
[»] chr6 (7 HSPs)
chr6 (204-244)||(29144384-29144424)
chr6 (213-261)||(29123227-29123275)
chr6 (208-267)||(29153005-29153064)
chr6 (198-244)||(29130417-29130463)
chr6 (207-241)||(32973557-32973591)
chr6 (207-247)||(29299164-29299204)
chr6 (207-267)||(34281040-34281100)
[»] scaffold0134 (1 HSPs)
scaffold0134 (199-265)||(17170-17236)
[»] chr3 (1 HSPs)
chr3 (204-281)||(9704316-9704393)
[»] chr7 (1 HSPs)
chr7 (199-249)||(42445419-42445469)
[»] chr5 (2 HSPs)
chr5 (150-247)||(32642029-32642126)
chr5 (199-252)||(40548373-40548426)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 7435983 - 7436280
Alignment:
Q  9 gaaatgaaatgcatcttggaccggaagagaggttcaaccacgggcctaactacattgtcaaacacgatagtatgccgtaagatgagagatgcatcggcat 108  Q
    |||||||||| || | ||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  7435983 gaaatgaaatacaacgtggactggaataggggttcaaccacgggcctaactacattgtccaacacgatagtatgccgtaagatgagagatgcatcagcat 7436082  T
Q  109 gatcagaatgatttccatgtatgatttgattccggtagattttcatgaaataagggttttgaaataacattgaccatgaattacatgtagattcgaatcg 208  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  7436083 gatcagaatgatttccttgtatgattcgattccggtagattttcatgaaataagggttttgaaataacattgaccatgatttacatgtagattcaaatcg 7436182  T
Q  209 cttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaacctttccggtggtcggcgtcgcagatttct 306  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  7436183 cttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtatgtgattgctaaccttaccggtagccggcgtcgcagatttct 7436280  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 75 - 306
Target Start/End: Original strand, 7524875 - 7525106
Alignment:
Q  75 atagtatgccgtaagatgagagatgcatcggcatgatcagaatgatttccatgtatgatttgattccggtagattttcatgaaataagggttttgaaata 174  Q
    |||||||||||||| ||||||||||||||  |||   ||||||||||||  | |||||| || || ||||| |||||||||||||||| |||||||||||    
T  7524875 atagtatgccgtaaaatgagagatgcatcatcatagccagaatgatttctgtatatgatatggttgcggtacattttcatgaaataagagttttgaaata 7524974  T
Q  175 acattgaccatgaattacatgtagattcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgct 274  Q
    ||| ||||||||  ||| ||  |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524975 acaatgaccatggtttagatacagattcaaatcgctgcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgct 7525074  T
Q  275 aacctttccggtggtcggcgtcgcagatttct 306  Q
    |||||||||||| |||||||||||||||||||    
T  7525075 aacctttccggtcgtcggcgtcgcagatttct 7525106  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 7519871 - 7519695
Alignment:
Q  76 tagtatgccgtaagatga-gagatgcatcggcatgatcagaatgatttccatgtatgatttgattccggtagattttcatgaaataagggttttgaaata 174  Q
    |||||||||||||||| | ||||||||||  | | || ||||||||||||||| ||||| ||||| | |||||   ||||||||||  |||||| |||||    
T  7519871 tagtatgccgtaagataaagagatgcatcatcttaatgagaatgatttccatgcatgatatgattgcagtagacgctcatgaaatagtggttttcaaata 7519772  T
Q  175 acattgaccatgaattacatgtagattcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgca 251  Q
    ||||||||| ||| ||||||| |  ||| ||| ||||||||||||| ||||||| ||||||||||||| | ||||||    
T  7519771 acattgaccgtgatttacatgcaagttcaaatagcttcaaagattttagaggcagttttgatagaatgaagaatgca 7519695  T

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Target: scaffold0129 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 34446 - 34513
Alignment:
Q  214 aagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaaccttt 281  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||| | || |||||||||||||||    
T  34446 aagatttaagaggcaattttgatagaatgaaaaatgcaagatcatcatgaatatgattgctaaccttt 34513  T

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Target: scaffold0129; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 18046 - 18117
Alignment:
Q  210 ttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaaccttt 281  Q
    ||||||||||||||||||| ||| || |||||||||||||||| ||| ||| | || |||||||||||||||    
T  18046 ttcaaagatttaagaggcagtttggacagaatggaaaatgcaagatcatcatgaatatgattgctaaccttt 18117  T

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Target: scaffold0129; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 9618 - 9541
Alignment:
Q  204 aatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaaccttt 281  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||  || |   | ||||||||||||||||||    
T  9618 aatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtggatgtgattgctaaccttt 9541  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 9603475 - 9603541
Alignment:
Q  199 attcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 265  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||| || |||| ||| ||||||||    
T  9603475 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtat 9603541  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 37894999 - 37894933
Alignment:
Q  199 attcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 265  Q
    |||| ||||||||||||||||| ||||| | ||| ||||||||||| || |||||||| ||||||||    
T  37894999 attcaaatcgcttcaaagatttgagagggagtttggatagaatggagaaggcaacatcttcaggtat 37894933  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 48742877 - 48742948
Alignment:
Q  210 ttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaaccttt 281  Q
    ||||||||||||||||||||||| || | |||  ||||| ||| ||| ||||| || |||||||||||||||    
T  48742877 ttcaaagatttaagaggcaatttggagacaataaaaaattcaagatcatcaggaatatgattgctaaccttt 48742948  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 9573514 - 9573469
Alignment:
Q  199 attcgaatcgcttcaaagatttaagaggcaattttgatagaatgga 244  Q
    |||| |||||||| |||||||||| ||||||||| |||||||||||    
T  9573514 attcaaatcgcttaaaagatttaataggcaatttggatagaatgga 9573469  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 29144424 - 29144384
Alignment:
Q  204 aatcgcttcaaagatttaagaggcaattttgatagaatgga 244  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  29144424 aatcgcttcaaagatttaagaggcaatttcgatagaatgga 29144384  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 29123275 - 29123227
Alignment:
Q  213 aaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcag 261  Q
    |||||||||||||||||||||||||||||||| || |||| ||| ||||    
T  29123275 aaagatttaagaggcaattttgatagaatggagaaggcaatatcatcag 29123227  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 29153005 - 29153064
Alignment:
Q  208 gcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgt 267  Q
    |||| ||||||||||||||||||||||| |||||||| || |||| ||| |||| |||||    
T  29153005 gcttgaaagatttaagaggcaattttgagagaatggagaaggcaatatcatcagatatgt 29153064  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 29130463 - 29130417
Alignment:
Q  198 gattcgaatcgcttcaaagatttaagaggcaattttgatagaatgga 244  Q
    ||||| |||||||| ||||||||||||||||| ||||| ||||||||    
T  29130463 gattcaaatcgcttgaaagatttaagaggcaactttgagagaatgga 29130417  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 32973557 - 32973591
Alignment:
Q  207 cgcttcaaagatttaagaggcaattttgatagaat 241  Q
    ||||| |||||||||||||||||||||||||||||    
T  32973557 cgcttgaaagatttaagaggcaattttgatagaat 32973591  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 29299204 - 29299164
Alignment:
Q  207 cgcttcaaagatttaagaggcaattttgatagaatggaaaa 247  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  29299204 cgcttaaaagatttaagaggcaactttgagagaatggaaaa 29299164  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 34281100 - 34281040
Alignment:
Q  207 cgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgt 267  Q
    ||||| ||||||||||||||||||||||| ||||| || || |||| ||| |||| |||||    
T  34281100 cgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcagatatgt 34281040  T

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Target: scaffold0134 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 17170 - 17236
Alignment:
Q  199 attcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 265  Q
    |||| |||| ||||||||||||||||||||| |||||||||||||| ||   || ||||||||||||    
T  17170 attcaaatctcttcaaagatttaagaggcaactttgatagaatggataagctaatatcgtcaggtat 17236  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 9704393 - 9704316
Alignment:
Q  204 aatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaaccttt 281  Q
    ||||| || |||||||| ||||| |||||||||||||||||||||||||  || ||| ||||||  || |||||||||    
T  9704393 aatcgttttaaagatttcagaggtaattttgatagaatggaaaatgcaagttcatcatgtatgtagttcctaaccttt 9704316  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 42445469 - 42445419
Alignment:
Q  199 attcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaatg 249  Q
    |||| |||||||| |||||||||||||| |||||||||| |||||| ||||    
T  42445469 attcaaatcgcttaaaagatttaagaggtaattttgatataatggagaatg 42445419  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 32642126 - 32642029
Alignment:
Q  150 ttcatgaaataagggttttgaaataacattgaccatgaattacatgtagattcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaa 247  Q
    |||||||||  ||| |||| ||| || | ||||||||| |||| |  | |||| ||| ||| ||||||||||||||| |||||||||||||| |||||    
T  32642126 ttcatgaaaagaggattttcaaacaaaaatgaccatgatttacgtacatattcaaattgctacaaagatttaagaggtaattttgatagaattgaaaa 32642029  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 40548426 - 40548373
Alignment:
Q  199 attcgaatcgcttcaaagatttaagaggcaattttgatagaatggaaaatgcaa 252  Q
    |||| ||||||||||||||||||| ||| | |||| ||||||||||||| ||||    
T  40548426 attcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaa 40548373  T

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