View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_high_28 (Length: 242)

Name: NF16105_high_28
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_high_28
NF16105_high_28
[»] scaffold0001 (1 HSPs)
scaffold0001 (103-223)||(12444-12564)
[»] chr6 (3 HSPs)
chr6 (95-225)||(11681970-11682100)
chr6 (137-226)||(18985578-18985667)
chr6 (178-225)||(11681842-11681889)
[»] chr5 (1 HSPs)
chr5 (137-226)||(23919850-23919939)
[»] chr8 (1 HSPs)
chr8 (137-226)||(30344110-30344199)
[»] chr7 (5 HSPs)
chr7 (95-176)||(25350428-25350509)
chr7 (95-176)||(25356122-25356203)
chr7 (164-225)||(33098112-33098173)
chr7 (178-225)||(25350264-25350311)
chr7 (178-225)||(25355958-25356005)
[»] chr4 (2 HSPs)
chr4 (95-182)||(1967812-1967899)
chr4 (180-225)||(1967593-1967638)


Alignment Details
Target: scaffold0001 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 12444 - 12564
Alignment:
Q  103 tgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggt 202  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  12444 tgagcgtaacaaagctgaaaaatccttgggaggaggttggttacaatttgttagggacaattacctacaagagggcgacaagctgctattcgatttaggt 12543  T
Q  203 gttcctcctacagtgttgttt 223  Q
    |||||||||||| ||||||||    
T  12544 gttcctcctacaatgttgttt 12564  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 11682100 - 11681970
Alignment:
Q  95 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttg 194  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||    
T  11682100 attaccgctgagcgtaacaaggctgaaaaatccttgggaggaggttggttccagtttgttagggacaatcacctacaagaggacgacaagtagctatttg 11682001  T
Q  195 atttaggtgttcctcctacagtgttgtttgt 225  Q
    |||| |||||   ||||||| ||||||||||    
T  11682000 atttgggtgtctttcctacaatgttgtttgt 11681970  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 18985667 - 18985578
Alignment:
Q  137 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 226  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18985667 ggttggttccaatttgttagggacaatcacctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtg 18985578  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 11681889 - 11681842
Alignment:
Q  178 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 225  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11681889 cgacaagctgctatttgatttaggtgttcctcctacaatgttgtttgt 11681842  T

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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 23919850 - 23919939
Alignment:
Q  137 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 226  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23919850 ggttggttccaatttgttagggacaatcacctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtg 23919939  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 30344110 - 30344199
Alignment:
Q  137 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  30344110 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgttattcgatttaggtgttactcctacagtgttgtttgtg 30344199  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 25350509 - 25350428
Alignment:
Q  95 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagg 176  Q
    ||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  25350509 attaccgctgagcgtaacaaggctgaaaaatccttgggaagaggttggttccagtttgttagggacaatcacctacaagagg 25350428  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 25356203 - 25356122
Alignment:
Q  95 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagg 176  Q
    ||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  25356203 attaccgctgagcgtaacaaggctgaaaaatccttgggaagaggttggttccagtttgttagggacaatcacctacaagagg 25356122  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 33098173 - 33098112
Alignment:
Q  164 cacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 225  Q
    |||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||||||||||    
T  33098173 cacctacaagagggtgacaagctgctattcgatttggatgttcctcctacaatgttgtttgt 33098112  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 25350311 - 25350264
Alignment:
Q  178 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 225  Q
    |||||||||||| || ||||| |||||||||||| |||||||||||||    
T  25350311 cgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgt 25350264  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 25356005 - 25355958
Alignment:
Q  178 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 225  Q
    |||||||||||| || ||||| |||||||||||| |||||||||||||    
T  25356005 cgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgt 25355958  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 1967899 - 1967812
Alignment:
Q  95 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgaca 182  Q
    ||||||| ||||||||||||   ||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  1967899 attaccgctgagcgtaacaagcttgaaaaatcattgggaggaggttggttccagtttgttagggacaaccacctacaagaggacgaca 1967812  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 1967638 - 1967593
Alignment:
Q  180 acaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 225  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1967638 acaagctgctatttgatttgggtgttcctcctacagtgttgtttgt 1967593  T

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