View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_high_37 (Length: 209)
Name: NF16105_high_37
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 38312719 - 38312894
Alignment:
| Q |
16 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttttcatgatagga |
115 |
Q |
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| T |
38312719 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttctcatgatagga |
38312818 |
T |
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| Q |
116 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
191 |
Q |
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| T |
38312819 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
38312894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 46922347 - 46922522
Alignment:
| Q |
16 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttttcatgatagga |
115 |
Q |
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| T |
46922347 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttctcatgatagga |
46922446 |
T |
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| Q |
116 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
191 |
Q |
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| T |
46922447 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
46922522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 46890549 - 46890473
Alignment:
| Q |
53 |
gttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttttcatgataggaactctgaaattcag |
129 |
Q |
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| T |
46890549 |
gttggattgctgtaaagaacagaatccatgttttccaagcaaatgatagttctcatgaaatgaactctgaaattcag |
46890473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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