View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16105_high_5 (Length: 504)
Name: NF16105_high_5
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_high_5 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 486
Target Start/End: Complemental strand, 6145498 - 6145037
Alignment:
| Q |
9 |
aagaatgtgcaaaataatgttgtggctgattgttatgatggaaagtgtgatgatggtggagcagggagaatggtgtgaattagttcttaattttacattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145498 |
aagaatgtgcaaaataatgttgtggctgattgttatgatggaaagtgtgatgatggtggagcagggagaatggtgtgaattagttcttaattttacattg |
6145399 |
T |
|
| Q |
109 |
attaaattctaaaatttcatctaatgatggctggaatactatatatgtttgcatgtagtaaagttgtataatgtgtaaaattggtttttaattctgtgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
6145398 |
attaaattctaaaatttcatctaatgatggctggaatactatatatgtttgcatgtagtaaagttgtataatatgtaaatttggtttttaattgtgtgtt |
6145299 |
T |
|
| Q |
209 |
agttactttgctttgaactgatttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145298 |
agttactttgctttgaactgatttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattata |
6145199 |
T |
|
| Q |
309 |
tgtaatatttcacaagaaaattatgagtattttcaatgc-aaaagtaccacattctcttaatttttgtactaacatagtaacataccaatcttgtactgc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6145198 |
tgtaatatttcacaagaaaattatgagtattttcaatgcaaaaagtaccacattctcttaattt----------------acataccaatcttgtactgc |
6145115 |
T |
|
| Q |
408 |
ggtgcccatgaaaagagtataagttgacaaaacgtaacatacggggaaagtccttgttctcctttctcgacaatagttc |
486 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6145114 |
ggtgcccatgaaaatagtataagttgacaaaacgtaacattcgggg-aagtccttgttctcctttctcgacaatagttc |
6145037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 11596 - 11529
Alignment:
| Q |
411 |
gcccatgaaaagagtataagttgacaaaacgtaacatacggggaaagtccttgttctcctttctcgac |
478 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
11596 |
gcccatgaaaatagtatatgttgacaaaacgtaacattaggggaaagtccttgttgtcctttctcgac |
11529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University