View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16105_high_8 (Length: 435)
Name: NF16105_high_8
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_high_8 |
 | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 170 - 419
Target Start/End: Original strand, 18276801 - 18277050
Alignment:
| Q |
170 |
ttttctttatcatgtagagaggattatagcatgtatttttgtcagttattgacctaagaatctaagatttctttgacgacagataggggttgtagtattc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18276801 |
ttttctttatcatgtagagaggattatagcatgcatttttgtcagttattgacctaagaatctaagatttctttgacgacagataggggttgtagtattc |
18276900 |
T |
|
| Q |
270 |
tattcaatttaaaagccaataatacatgcattaatgcatacatttttcctttaaaagttctgatgcaacttttattatcacttagtcattttaaagtttt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18276901 |
tattcaatttaaaagccaataatacatgcattaatgcatacatttttcctttaaaagttctgatgcaacttttattgtcacttagtcactttaaagtttt |
18277000 |
T |
|
| Q |
370 |
gtggtgcctttaagtgacagagtgaagaagacatattcatggcttccttg |
419 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18277001 |
gtggtgcctttaagggacagagtgaagaagacatattcatggcttccttg |
18277050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 18276449 - 18276610
Alignment:
| Q |
16 |
caatagtatgacaattggaataactagtttcagtattgaagactcctctctgcatatgatagagtagcgatgaacttgaagattgagaatggtgaatgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
18276449 |
caatagtatgacaattggaataactagtttcagtattgaagactcctctctgcatatgatagagtagctatgaacttgaagagtgagaatggtgaatgat |
18276548 |
T |
|
| Q |
116 |
aagtgttatacttgcacggagatcccatggaagaatccgttaccatttgatgctttttcttt |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18276549 |
aagtgttatacttgcacggagatctcatggaagaatccgttaccatttgatgctttttcttt |
18276610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 114 - 300
Target Start/End: Original strand, 18267056 - 18267245
Alignment:
| Q |
114 |
ataagtgttatacttgcacggagatcccatggaagaatccgttacc-atttgatgctttttctttatcatgtagagaggattatagcatgtatttttgtc |
212 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||| || ||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
18267056 |
ataagtgttatacttgcgcagagatcctatggaagaatctgtcacccatttgatgctttttctttgtcatttagagaggattatagcatgtagttttgtc |
18267155 |
T |
|
| Q |
213 |
agttattgacctaagaatctaagatttct--ttgacgacagataggggttgtagtattctattcaatttaaaagccaataatacatgcat |
300 |
Q |
| |
|
||||||||||||| ||||||| |||||| | | |||||||| ||||||||||| |||| ||||||||| || || | ||||||||| |
|
|
| T |
18267156 |
ggttattgacctaaaaatctaatatttcttgtcaaagacagataaaggttgtagtatcctatccaatttaaatgctaacagtacatgcat |
18267245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 311 - 419
Target Start/End: Original strand, 18267278 - 18267386
Alignment:
| Q |
311 |
atttttcctttaaaagttctgatgcaacttttattatcacttagtcattttaaagttttgtggtgcctttaagtgacagagtgaagaagacatattcatg |
410 |
Q |
| |
|
|||||||||||||| | | |||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18267278 |
atttttcctttaaatggtttgatgcaatttttattgtcacttagttatttttcagttttgtcgtgcctttaagtgacagagtgaagaagacatgttcatg |
18267377 |
T |
|
| Q |
411 |
gcttccttg |
419 |
Q |
| |
|
||||||||| |
|
|
| T |
18267378 |
gcttccttg |
18267386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 2284 - 2158
Alignment:
| Q |
114 |
ataagtgttatacttgcacggagatcccatggaagaatccgttacca-tttgatgctttttctttatcatgtagagaggattatagcatgtatttttgtc |
212 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||||| || |||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
2284 |
ataagtgttatacttgcacagagatcctgcggcagaatctgtcaccaatttgatgctttttctttgtcatgtagagagaattatagcatgtatttctgtc |
2185 |
T |
|
| Q |
213 |
agttattgacctaagaatctaagattt |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2184 |
agttattgacctaagaatctaagattt |
2158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University