View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_low_13 (Length: 393)

Name: NF16105_low_13
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_low_13
NF16105_low_13
[»] chr6 (17 HSPs)
chr6 (179-384)||(13942263-13942468)
chr6 (127-384)||(14026341-14026598)
chr6 (122-364)||(13891685-13891927)
chr6 (117-350)||(13861522-13861758)
chr6 (127-364)||(14016227-14016464)
chr6 (130-279)||(14085817-14085966)
chr6 (127-271)||(14111623-14111767)
chr6 (127-364)||(14048440-14048678)
chr6 (127-364)||(13471678-13471915)
chr6 (207-364)||(13873981-13874138)
chr6 (18-91)||(13933455-13933528)
chr6 (18-91)||(14026301-14026374)
chr6 (26-120)||(13861686-13861780)
chr6 (127-166)||(13933495-13933534)
chr6 (53-123)||(14016222-14016292)
chr6 (53-131)||(14048435-14048513)
chr6 (26-91)||(14111591-14111656)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 179 - 384
Target Start/End: Original strand, 13942263 - 13942468
Alignment:
Q  179 tgattccattaaaactgaggtctaacacttgaagtgagtttctaacacaaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgtt 278  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13942263 tgattccattagaactgaggtctaacacttgaagtgagtttctaacacaaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgtt 13942362  T
Q  279 ttgaatcagagttaaagaatgtaaggtgcatacattcatgaaggatttaaacgccacacccttcaatttattgtttgataggtcaatctccagaagcgag 378  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  13942363 ttgaatcagatttaaagaacgtaaggtgcatacattcatgaaggatttaaatgccacacccttcaatttattgtatgataggtcaatctcctgaagcgag 13942462  T
Q  379 ttcatc 384  Q
    ||||||    
T  13942463 ttcatc 13942468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 127 - 384
Target Start/End: Original strand, 14026341 - 14026598
Alignment:
Q  127 agatccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgagtttctaacac 226  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||  |||||||||||||||||||||||||||||||||||    
T  14026341 agatccaatgttttcaatgatgtgaatgcagaaaggtcaggtagtgttccagtgattctgttatcactgaggtctaacacttgaagtgagtttctaacac 14026440  T
Q  227 aaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgttttgaatcagagttaaagaatgtaaggtgcatacattcatgaaggattt 326  Q
    |||| | |||||||||| |||||| ||||||||| |||||| |||||||||||  |  || |  ||| ||| ||||||||||||||||||||||||| ||    
T  14026441 aacctccagacaaattgtgaagaactgtttgaagttcttctttgaaattgtttgcatacaaaactaatgaacgtaaggtgcatacattcatgaaggactt 14026540  T
Q  327 aaacgccacacccttcaatttattgtttgataggtcaatctccagaagcgagttcatc 384  Q
    ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  14026541 aaacgccacacccttcagtttattgtatgataggtcaatctcctgaagcgagttcatc 14026598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 122 - 364
Target Start/End: Complemental strand, 13891927 - 13891685
Alignment:
Q  122 aagtgagatccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgagtttct 221  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||  |||  ||||||||||||||||||||||||||    
T  13891927 aagtaagatccaatgttttcaatgatgtgaatgcagaaaggtcgggtagtcctccagtgattccattccaaccaaggtctaacacttgaagtgagtttct 13891828  T
Q  222 aacacaaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgttttgaatcagagttaaagaatgtaaggtgcatacattcatgaag 321  Q
    |||||| || | |||||||||| ||| ||||| ||||||||||||||| |||||||||||| ||| |  |||||| |||| ||| |||||||||||||||    
T  13891827 aacacatccaccagacaaattgtgaataattgattgaaggtcttctgttaaattgttttgactcaaacctaaagattgtatggtacatacattcatgaag 13891728  T
Q  322 gatttaaacgccacacccttcaatttattgtttgataggtcaa 364  Q
     |||||||| || ||||||||||| |||| | ||| |||||||    
T  13891727 aatttaaacaccccacccttcaatctattttctgacaggtcaa 13891685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 117 - 350
Target Start/End: Complemental strand, 13861758 - 13861522
Alignment:
Q  117 attagaagtgagatccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgag 216  Q
    ||||||||  |||||||||||||||||||||||||||  ||||||||| |  |  ||||||| |||| ||||| ||||||  ||||||||||| ||||||    
T  13861758 attagaagaaagatccaatgttttcaatgatgtgaatatagaaaggtcgggcaaagttccagcgatttcattataactgatatctaacacttggagtgag 13861659  T
Q  217 tttctaacacaaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgtttt---gaatcagagttaaagaatgtaaggtgcatacat 313  Q
    |||||||||||||| |||||||||||  |||||||| |||||||||||||||| ||||||||||   || |||||  |||||||  ||||||||||||||    
T  13861658 tttctaacacaaccactagacaaattttgaagaattatttgaaggtcttctgttaaattgttttgacgactcagatctaaagaacttaaggtgcatacat 13861559  T
Q  314 tcatgaaggatttaaacgccacacccttcaatttatt 350  Q
    ||||||||||||||||| || ||||||||||| ||||    
T  13861558 tcatgaaggatttaaacaccccacccttcaatctatt 13861522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 127 - 364
Target Start/End: Original strand, 14016227 - 14016464
Alignment:
Q  127 agatccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgagtttctaacac 226  Q
    ||||||||||||| |||||||||||||  ||||||||| | ||  |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  14016227 agatccaatgtttgcaatgatgtgaatatagaaaggtcgggtatagttccagtgattccattagaacggaggtctaacacttgaagtgagtttctaacac 14016326  T
Q  227 aaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgttttgaatcagagttaaagaatgtaaggtgcatacattcatgaaggattt 326  Q
    ||   |||||||||| | ||| ||||  ||||||||||||||||||||||||||     | |  ||||||| ||||||  |||| |||||||||||||||    
T  14016327 aagtactagacaaatagtgaaaaattaattgaaggtcttctgtgaaattgttttcttcaatatctaaagaacgtaaggcacataaattcatgaaggattt 14016426  T
Q  327 aaacgccacacccttcaatttattgtttgataggtcaa 364  Q
    ||| ||||| |||||||||||||| |||||||||||||    
T  14016427 aaatgccacgcccttcaatttattatttgataggtcaa 14016464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 14085817 - 14085966
Alignment:
Q  130 tccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgagtttctaacacaac 229  Q
    |||||||||||||||||||||||||| |||||||| | ||  |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  14085817 tccaatgttttcaatgatgtgaatgcggaaaggtcgggtaaagttccagtgattccattataactgaggtctaacacttgaagtgagtttctgacacaac 14085916  T
Q  230 cgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgttt 279  Q
    | |||||||||||  ||||||||||||||||||||||| |||||||||||    
T  14085917 cactagacaaattttgaagaattgtttgaaggtcttctatgaaattgttt 14085966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 14111623 - 14111767
Alignment:
Q  127 agatccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgagtttctaacac 226  Q
    |||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  14111623 agatgcaatgttttcaatgatgtgaatatagaaaggtcaggtagtgttccagtgattccattgaaactaaggtctaacacttgaagtgagtttctaacac 14111722  T
Q  227 aaccgctagacaaattgcgaagaattgtttgaaggtcttctgtga 271  Q
    |||| |||||||||||| ||| ||||| |||||||||||| ||||    
T  14111723 aaccactagacaaattgtgaataattgattgaaggtcttcagtga 14111767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 127 - 364
Target Start/End: Original strand, 14048440 - 14048678
Alignment:
Q  127 agatccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgagtttctaacac 226  Q
    ||||| |||||||| |||||||| |||| ||||| ||| | ||   ||||||||||| ||||||||||||| |||||||||||||  |||||||||||||    
T  14048440 agatctaatgtttttaatgatgtaaatgtagaaaagtcggctaaatttccagtgatttcattaaaactgagatctaacacttgaaacgagtttctaacac 14048539  T
Q  227 aaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattg-ttttgaatcagagttaaagaatgtaaggtgcatacattcatgaaggatt 325  Q
    |||| |||||||||||| ||| ||||| || ||||||||| | ||||||| ||||   | | |  ||||||| |||||| ||||| ||||||||||||||    
T  14048540 aaccactagacaaattgtgaataattgattaaaggtcttcagggaaattgtttttttttaatatctaaagaacgtaaggcgcataaattcatgaaggatt 14048639  T
Q  326 taaacgccacacccttcaatttattgtttgataggtcaa 364  Q
    |||| ||| |||||||||||||||| | |||||||||||    
T  14048640 taaatgccccacccttcaatttattatgtgataggtcaa 14048678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 364
Target Start/End: Complemental strand, 13471915 - 13471678
Alignment:
Q  127 agatccaatgttttcaatgatgtgaatgcagaaaggtcagatagtgttccagtgattccattaaaactgaggtctaacacttgaagtgagtttctaacac 226  Q
    |||||||||||||||| ||||||||||  ||||||  | | ||  |||||||||||||||||  ||| ||||| || ||||| |||||| ||||||||||    
T  13471915 agatccaatgttttcattgatgtgaatagagaaagaccgggtaaagttccagtgattccattccaaccgaggtttagcacttcaagtgaatttctaacac 13471816  T
Q  227 aaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgttttgaatcagagttaaagaatgtaaggtgcatacattcatgaaggattt 326  Q
    |||| |||||||||||| ||| ||||  ||| |||||||| || ||||||||||    || |  ||||||| |||||| ||||| |||||||||||||||    
T  13471815 aaccactagacaaattgtgaataattaattgcaggtcttcagttaaattgttttcttccatatctaaagaacgtaaggcgcataaattcatgaaggattt 13471716  T
Q  327 aaacgccacacccttcaatttattgtttgataggtcaa 364  Q
    ||| |||||||||||||||||||| | |||||||||||    
T  13471715 aaatgccacacccttcaatttattatatgataggtcaa 13471678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 207 - 364
Target Start/End: Complemental strand, 13874138 - 13873981
Alignment:
Q  207 ttgaagtgagtttctaacacaaccgctagacaaattgcgaagaattgtttgaaggtcttctgtgaaattgttttgaatcagagttaaagaatgtaaggtg 306  Q
    |||||||||||||||||||||||| ||||||||||   ||| ||||| ||||||| |||  ||||||||||||  | |||||  ||||||| ||||||||    
T  13874138 ttgaagtgagtttctaacacaaccactagacaaatcatgaataattgattgaaggccttgggtgaaattgtttaaattcagatctaaagaacgtaaggtg 13874039  T
Q  307 catacattcatgaaggatttaaacgccacacccttcaatttattgtttgataggtcaa 364  Q
    |||| |||  ||| ||||||||||  | ||||||||||  |||| | |||||||||||    
T  13874038 catatatttctgatggatttaaacatcccacccttcaaactattttgtgataggtcaa 13873981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 13933455 - 13933528
Alignment:
Q  18 actacccccagggatctctccacttagttgattgaaagaaagatacaatgcttttaatgatgtgaatacagaaa 91  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||| ||||||    
T  13933455 actacccccagggatctctccacttagttgattggaagaaagatccaatgttttcaatgatgtgaatgcagaaa 13933528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 14026301 - 14026374
Alignment:
Q  18 actacccccagggatctctccacttagttgattgaaagaaagatacaatgcttttaatgatgtgaatacagaaa 91  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||| ||||||    
T  14026301 actacccccagggatctctccacttagttgattggaagaaagatccaatgttttcaatgatgtgaatgcagaaa 14026374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 13861780 - 13861686
Alignment:
Q  26 cagggatctctccacttagttgattgaaagaaagatacaatgcttttaatgatgtgaatacagaaaagtcgggcaaagctccagtgatttcatta 120  Q
    |||| |||| |||||||||||||||  ||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||| ||||| ||||||||||    
T  13861780 caggaatctttccacttagttgattagaagaaagatccaatgttttcaatgatgtgaatatagaaaggtcgggcaaagttccagcgatttcatta 13861686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 13933495 - 13933534
Alignment:
Q  127 agatccaatgttttcaatgatgtgaatgcagaaaggtcag 166  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13933495 agatccaatgttttcaatgatgtgaatgcagaaaggtcag 13933534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 14016222 - 14016292
Alignment:
Q  53 aagaaagatacaatgcttttaatgatgtgaatacagaaaagtcgggcaaagctccagtgatttcattagaa 123  Q
    ||||||||| ||||| ||  ||||||||||||| ||||| |||||| | || |||||||||| ||||||||    
T  14016222 aagaaagatccaatgtttgcaatgatgtgaatatagaaaggtcgggtatagttccagtgattccattagaa 14016292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 14048435 - 14048513
Alignment:
Q  53 aagaaagatacaatgcttttaatgatgtgaatacagaaaagtcgggcaaagctccagtgatttcattagaagtgagatc 131  Q
    |||||||||  |||| |||||||||||| |||  |||||||||||  |||  |||||||||||||||| || |||||||    
T  14048435 aagaaagatctaatgtttttaatgatgtaaatgtagaaaagtcggctaaatttccagtgatttcattaaaactgagatc 14048513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 14111591 - 14111656
Alignment:
Q  26 cagggatctctccacttagttgattgaaagaaagatacaatgcttttaatgatgtgaatacagaaa 91  Q
    |||| |||| |||||| | ||||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  14111591 caggaatctttccactcaattgattggaagaaagatgcaatgttttcaatgatgtgaatatagaaa 14111656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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