View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_14 (Length: 387)
Name: NF16105_low_14
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 2909385 - 2909024
Alignment:
| Q |
11 |
cacagatggatcttgtttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcc |
110 |
Q |
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| T |
2909385 |
cacagatggatcttgtttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcc |
2909286 |
T |
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| Q |
111 |
ttaattattgtgaaagctatcacttcacatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaag |
210 |
Q |
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| T |
2909285 |
ttaattattgtgaaagctatcacttcacataggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaag |
2909186 |
T |
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| Q |
211 |
ttgttgttcgccactcttaccgtgaagcaaaccaatgcacagatgctttggctaactatggttgttcgatggatttggagatctgttttttgatgtctat |
310 |
Q |
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| T |
2909185 |
ttgttgttcgccactcttaccgtgaagcaaaccaatgcacagatgctttggctaactatggttgttcgatggatttgggggtctgttttttgatgtctat |
2909086 |
T |
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| Q |
311 |
gctagcaatattagtctgctattgctttctgatttgatggggaattctatcccacatgtaat |
372 |
Q |
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| T |
2909085 |
cctagcaatattagtctgctattgctttctgatttgatggggaattctatcccacatgtaat |
2909024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 26 - 359
Target Start/End: Complemental strand, 156448 - 156106
Alignment:
| Q |
26 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtga-- |
123 |
Q |
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| T |
156448 |
tttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgtcatg |
156349 |
T |
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| Q |
124 |
---aagctatcacttca-catgggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgttc |
219 |
Q |
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| T |
156348 |
tcaaagttatcacttcaacgtgggcatggtagtttgagagggagatcgctagttgacaagattcatcgcttgcttgcacttgattcggaagttgttgttc |
156249 |
T |
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| Q |
220 |
g-ccactcttaccgtgaagcaaaccaatgcacagatgctttg-gctaactatggttgttcgatggatttggagatctgttt-tttgatgtctatgctagc |
316 |
Q |
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| T |
156248 |
caccactcttaccgtgaaaaaaaccaatgtgcatacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcatagc |
156149 |
T |
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| Q |
317 |
aatattagtctgctattgctttctgatttgatggggaattcta |
359 |
Q |
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| T |
156148 |
aatattagtcttctattgctttctgatttgatggggaattcta |
156106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 37054119 - 37053940
Alignment:
| Q |
68 |
tagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtgaaagctatcacttcacatgggcatcgtagctatggagagaggtcg |
167 |
Q |
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| T |
37054119 |
tagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgtaaaagctatcacttcacatgtgcatgatagctagagaaggaggtag |
37054020 |
T |
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| Q |
168 |
ttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgttcgccactcttaccgtgaagcaaaccaatgc |
248 |
Q |
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| T |
37054019 |
ctagttgagaagattcatcgcttcctttcacttgattgagaagttgttgtt-atcactcttatcatgaagcaaatcaatgc |
37053940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 31976670 - 31976459
Alignment:
| Q |
32 |
agaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtgaaagctatc |
131 |
Q |
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| T |
31976670 |
agaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttgacttcttacttgttgtgaaagcaatc |
31976571 |
T |
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| Q |
132 |
acttcacatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatc-gattgcttgcacttgattgagaagttgttgttcgccactcttac |
230 |
Q |
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| T |
31976570 |
acttcacatgagcatggtagttggagaaggaggttgctggttaacaagattcatcactttgcttgcacttgattgagaagttgttgttcatcacttttac |
31976471 |
T |
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| Q |
231 |
cgtgaagcaaac |
242 |
Q |
| |
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||| || ||||| |
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| T |
31976470 |
cgttaaacaaac |
31976459 |
T |
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