View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_17 (Length: 345)
Name: NF16105_low_17
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 42743563 - 42743886
Alignment:
| Q |
7 |
tagattatacttcctccataggatcctccaaacacaacaacaggggactcagttgctgacaaatttttcttgaggtcaatgataagagtggcataatcag |
106 |
Q |
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| T |
42743563 |
tagattatacttcctccataggatcctccaaacacaacaacaggggactcagttgctgacaaatttttcttgaggtcaatgataagagtggcataatcag |
42743662 |
T |
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| Q |
107 |
ccaaagcttgtgcagaactaagatatccaagtgtactgctatttgcatatgcaaccttcttcttgcctccaaatggaattgattttccatagaatctatg |
206 |
Q |
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| T |
42743663 |
ccaaagcttgtgcagaactaagatatccaagtgtactgctatttgcatatgcaaccttcttcttgcctccaaatggaattgattttccatagaatctatg |
42743762 |
T |
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| Q |
207 |
ctgcatttcaatttctaatgcataagataaacatatataattcaaatttaatttcaaatcattaaatacatatttgagttgatggtgagtttaacgaaat |
306 |
Q |
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| T |
42743763 |
ctgcatttcaatttctaatgcataagataaacatatataattcaaatttaatttcaaatcattaaatacatatttgagttgatggtgagtttaacgaaat |
42743862 |
T |
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| Q |
307 |
caactgcgattttgttgtcaattt |
330 |
Q |
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| T |
42743863 |
caactgcgattttgttgtcaattt |
42743886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 42748045 - 42748244
Alignment:
| Q |
12 |
tatacttcctccataggatcctccaaacacaacaacaggggactcagttgctgacaaatttttcttgaggtcaatgataagagtggcataatcagccaaa |
111 |
Q |
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| T |
42748045 |
tatacttccaccataggatcctccaaacacgacaacaggggaatcagttgctgataaattcttcttcagatcaattatgagtgtggcataatcagctaaa |
42748144 |
T |
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| Q |
112 |
gcttgtgcagaactaagatatccaagtgtactgctatttgcatatgcaaccttcttc-ttgcctccaaatggaattgattttccatagaatctatgctgc |
210 |
Q |
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| T |
42748145 |
gcctgtgtggaactcatatatccaagtgtgctgctagttttatttgcaa-cttcatcatttcctccaaatggtattgattttccatagtatctatgctgc |
42748243 |
T |
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