View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_18 (Length: 336)
Name: NF16105_low_18
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 67 - 265
Target Start/End: Complemental strand, 39494165 - 39493967
Alignment:
| Q |
67 |
cattcttgcacatatttggaagcttttaaacacgatattttcctcgttttagtggtttatttataatattatgtcaatgtaaagtgacgatcattgcact |
166 |
Q |
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| T |
39494165 |
cattcttgcacatatttggaagcttttaaacacgatattttcctcgttttagtggtttatttataatattatgtcaatgtaaagtgacgatcattgcact |
39494066 |
T |
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| Q |
167 |
gacgcaattttaattttaagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagactatgaggaagagg |
265 |
Q |
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| T |
39494065 |
gacgcaattttaattttaagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagaatatgaggaagagg |
39493967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 39494223 - 39494184
Alignment:
| Q |
4 |
tcactagttttcatatctcacattgttgttactaatttgg |
43 |
Q |
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| T |
39494223 |
tcactagttttcatatctcacattgttgttactaatttgg |
39494184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 39426144 - 39426063
Alignment:
| Q |
184 |
aagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagactatgaggaagagg |
265 |
Q |
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| T |
39426144 |
aagtttattgcaaatagcattaagcttatgagttacagtacaggttcaaattttactatacttacaaactatgtgggagagg |
39426063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 39189466 - 39189395
Alignment:
| Q |
184 |
aagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagactat |
255 |
Q |
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| T |
39189466 |
aagtatattgcaaatagtgttaagtttatgagttactgtattgattcaaattacaatatgctgacaaactat |
39189395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 39130970 - 39131031
Alignment:
| Q |
69 |
ttcttgcacatatttggaagcttttaaacacgatattttcct-cgttttagtggtttattta |
129 |
Q |
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| T |
39130970 |
ttcttgaacattttcggaagcttttaaacacaatttttttctccgttttagtggtttattta |
39131031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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