View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_20 (Length: 303)
Name: NF16105_low_20
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 39494222 - 39494512
Alignment:
| Q |
1 |
gaagattttcagcttgactaagacattcaacgttaaaatgattaaagatgtttttaaaaagttagatagatcaggtaattaaaaagatcaacaataataa |
100 |
Q |
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| T |
39494222 |
gaagattttcaacttgactaagacattcaacgttaaaatgattaaagatgtttt-aaaaagttagatagatcaggtaattaaaaagatcaacaataataa |
39494320 |
T |
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| Q |
101 |
aagaaatggttgcaatgaaaaagaacatttacccaattctggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatca |
200 |
Q |
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| T |
39494321 |
aagaaacggttgcaatgaaaaagaacatttacccaattctggttctattaaagcatcatattttttctctcttaactcaggccgcttcagttttccatca |
39494420 |
T |
|
| Q |
201 |
aatttacatggcattgactcaaaacccttcatgcgtccgtcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttctt |
292 |
Q |
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| T |
39494421 |
aatttacatggcattgactcaaaacccttcatgcgtccgtcaaactgcttctcttttggcttcagctccttcacgtgtgctttgaacttctt |
39494512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 292
Target Start/End: Original strand, 39426481 - 39426633
Alignment:
| Q |
140 |
tggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccg |
239 |
Q |
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| T |
39426481 |
tggttctattaaagcatcatattgtttctctcttaactcaggccgctccagctgtccatcaaattcacttggctttgactcaagaccctccatgcgtccc |
39426580 |
T |
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| Q |
240 |
tcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttctt |
292 |
Q |
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| T |
39426581 |
tcaaactgcttctcttttggcttgagctccttctcgtgtactttgaagttctt |
39426633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 140 - 292
Target Start/End: Complemental strand, 39130780 - 39130628
Alignment:
| Q |
140 |
tggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccg |
239 |
Q |
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| T |
39130780 |
tggttctattaaagaatcatattgtttctctcttaagtcaggccgcttcggttttccatgaaatttacttggctttgactcaagactcttcatgcatccc |
39130681 |
T |
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| Q |
240 |
tcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttctt |
292 |
Q |
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| T |
39130680 |
tcaaactgcttctcttttggcttaagatccttcaaatgtactttgaatttctt |
39130628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 39130949 - 39130837
Alignment:
| Q |
8 |
ttcagcttgactaagacattcaacgttaaaatgattaaagatgtttttaaaaagttagatagatcaggtaattaaaaagatcaacaataataaaagaaat |
107 |
Q |
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|||| |||||||||||| | |||| ||||||||||||||||||| |||||||| |||| |||||| |||||||||||| ||||||| | | |||||||| |
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| T |
39130949 |
ttcaacttgactaagacctacaacattaaaatgattaaagatgtctttaaaaaattaggtagatctggtaattaaaaatgtcaacaacattgaaagaaat |
39130850 |
T |
|
| Q |
108 |
ggttgcaatgaaa |
120 |
Q |
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| T |
39130849 |
ggttgaaatgaaa |
39130837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39426302 - 39426395
Alignment:
| Q |
1 |
gaagattttcagcttgactaagacattcaacgttaaaatgattaaagatgtttttaaaaagttagatagatcaggtaattaaaaagatcaacaa |
94 |
Q |
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||||||||||| ||||||||||||| ||| |||| ||||||||| |||||||||| || ||| |||||||||||||||| | |||||||| |
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| T |
39426302 |
gaagattttcaagttgactaagacatacaagattaacatgattaaacatgtttttaataaactaggcagatcaggtaattaaagatatcaacaa |
39426395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 39124764 - 39124729
Alignment:
| Q |
140 |
tggttctattaaagcatcatattttttctctcttaa |
175 |
Q |
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| T |
39124764 |
tggttctattaaagcatcatattgtttctctcttaa |
39124729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 39192453 - 39192514
Alignment:
| Q |
235 |
gtccgtcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttcttctct |
296 |
Q |
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|||| ||||||||||| |||||| |||||||||||||| | |||||||||||| |||||| |
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| T |
39192453 |
gtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctct |
39192514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 39198133 - 39198194
Alignment:
| Q |
235 |
gtccgtcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttcttctct |
296 |
Q |
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|||| ||||||||||| |||||| |||||||||||||| | |||||||||||| |||||| |
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| T |
39198133 |
gtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctct |
39198194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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