View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_21 (Length: 296)
Name: NF16105_low_21
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 46641620 - 46641741
Alignment:
| Q |
76 |
tgaatactaaataaagcgggcagaggtggtagcgtttgcttggaaggcacttcgtagccagatagcaacaaaagataaccttatgttaaggaatgtcctt |
175 |
Q |
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| T |
46641620 |
tgaatactaaataaagcgggcagaggtggtggcgtttgcttggaaggcacttcttaatcggatagcaacaaaatataaccttgtgttaaggaatgtcctt |
46641719 |
T |
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| Q |
176 |
ccaatggagtcttcaaatttgt |
197 |
Q |
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| T |
46641720 |
ccaatggagtcttcaaatttgt |
46641741 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 46641538 - 46641589
Alignment:
| Q |
19 |
acttatacaattttgttataccaaagtcataattttattttcataggaccct |
70 |
Q |
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| T |
46641538 |
acttatacaattttgttataccagtgtcataattttattttcataggaccct |
46641589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 46639459 - 46639510
Alignment:
| Q |
19 |
acttatacaattttgttataccaaagtcataattttattttcataggaccct |
70 |
Q |
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| T |
46639459 |
acttatataattttgttataccagtatcataattttattttcataggaccct |
46639510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 286
Target Start/End: Original strand, 13854076 - 13854258
Alignment:
| Q |
101 |
gtggtagcgtttgcttggaaggcacttcgtagccagatagcaacaaaagataaccttatgttaaggaatgtccttccaatggagtcttcaaatttgtgtg |
200 |
Q |
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| T |
13854076 |
gtggtggcgtttacttggaaggcacttcgtaaccggatagcaacaaaagataacctcgtgattaggaatgttattccaccggaggcctcaaatttgtgtg |
13854175 |
T |
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| Q |
201 |
tcttgtgcaatagggtcgaagaatcaacgcgtcaccttttattacattgtgatgaggttgcgaggtcggtttggttgagattgatg |
286 |
Q |
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| T |
13854176 |
tcttgtgtaatagggatgaagaatcaacgtgtcacctatttctacattg---tgaggtggtgaggtcggtttggttgagattgatg |
13854258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 286
Target Start/End: Complemental strand, 40754053 - 40753871
Alignment:
| Q |
101 |
gtggtagcgtttgcttggaaggcacttcgtagccagatagcaacaaaagataaccttatgttaaggaatgtccttccaatggagtcttcaaatttgtgtg |
200 |
Q |
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| T |
40754053 |
gtggtggcgtttgcttggaaggcactccgtaaccggatagctacaaaagataaccttgtgttaaggaacgttcttccaccggaggcttccattttgtgtg |
40753954 |
T |
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| Q |
201 |
tcttgtgcaatagggtcgaagaatcaacgcgtcaccttttattacattgtgatgaggttgcgaggtcggtttggttgagattgatg |
286 |
Q |
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| T |
40753953 |
ttttgtgcaatagggatgaggaatcctcaagtcatctttttttacattgtgaagtggt---gaggtcggtttggttgagattgatg |
40753871 |
T |
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