View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_low_22 (Length: 293)

Name: NF16105_low_22
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_low_22
NF16105_low_22
[»] chr5 (3 HSPs)
chr5 (21-287)||(5399818-5400088)
chr5 (135-168)||(38749571-38749604)
chr5 (131-175)||(14818307-14818351)
[»] scaffold0004 (1 HSPs)
scaffold0004 (134-171)||(101015-101052)
[»] chr6 (3 HSPs)
chr6 (135-168)||(17168912-17168945)
chr6 (145-186)||(13815057-13815098)
chr6 (126-166)||(9617454-9617494)
[»] chr7 (2 HSPs)
chr7 (126-166)||(19930940-19930980)
chr7 (132-168)||(30606069-30606105)
[»] chr4 (3 HSPs)
chr4 (131-175)||(32915610-32915654)
chr4 (131-175)||(5555136-5555180)
chr4 (131-171)||(25390890-25390930)
[»] chr8 (2 HSPs)
chr8 (128-175)||(14692470-14692517)
chr8 (131-171)||(18964192-18964232)
[»] chr3 (2 HSPs)
chr3 (133-185)||(41319316-41319369)
chr3 (131-171)||(35222953-35222993)
[»] scaffold0123 (1 HSPs)
scaffold0123 (126-166)||(44524-44564)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 5400088 - 5399818
Alignment:
Q  21 ctagtagtactactgtattgattgatcattaatagacatgtccatatacctaataaacacacgtactcttcggattatatgtgtctcagtatcatataca 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |    
T  5400088 ctagtagtactactgtattgattgatcattaatcgacatgtccatatacctaataaacacacgtactcttcagattagatgtgtctcagtatcatatata 5399989  T
Q  121 tatata----cgataccgacacatatagttacattgaattatgtcattttttaaattatcattgatgtcagacatatatatgtcgtgtcttgtgtccgta 216  Q
    ||||||    |||||| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5399988 tatatatacacgatactgaaacatataattacattgaattatgtcattttttaaattattattgatgtcagacatatatatgtcgtgtcttgtgtccgta 5399889  T
Q  217 tccgaatctgtgattgatggtatatatatagcttactatgtatctcttttttcaggaacgtttcatctcac 287  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5399888 tccgagtttgtgattgatggtatatatatagcttactatgtatctcttttttcaggaacgtttcatatcac 5399818  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 38749571 - 38749604
Alignment:
Q  135 acacatatagttacattgaattatgtcatttttt 168  Q
    ||||||||| ||||||||||||||||||||||||    
T  38749571 acacatataattacattgaattatgtcatttttt 38749604  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 14818307 - 14818351
Alignment:
Q  131 accgacacatatagttacattgaattatgtcattttttaaattat 175  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||    
T  14818307 accgacacatatgtttacattgaattatgtcatttctcaaattat 14818351  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 101052 - 101015
Alignment:
Q  134 gacacatatagttacattgaattatgtcattttttaaa 171  Q
    |||||||||| |||||||||||||||||||||||||||    
T  101052 gacacatataattacattgaattatgtcattttttaaa 101015  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 17168945 - 17168912
Alignment:
Q  135 acacatatagttacattgaattatgtcatttttt 168  Q
    ||||||||||||||||||||||||||||||||||    
T  17168945 acacatatagttacattgaattatgtcatttttt 17168912  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 13815057 - 13815098
Alignment:
Q  145 ttacattgaattatgtcattttttaaattatcattgatgtca 186  Q
    ||||||| ||||||||||||||||||||||| |||| |||||    
T  13815057 ttacattcaattatgtcattttttaaattattattggtgtca 13815098  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 9617494 - 9617454
Alignment:
Q  126 acgataccgacacatatagttacattgaattatgtcatttt 166  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  9617494 acgacaccgacacatataattacattgaattatgtgatttt 9617454  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 19930940 - 19930980
Alignment:
Q  126 acgataccgacacatatagttacattgaattatgtcatttt 166  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  19930940 acgatatcgacacatataattacattgaattatgtcatttt 19930980  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 30606069 - 30606105
Alignment:
Q  132 ccgacacatatagttacattgaattatgtcatttttt 168  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30606069 ccgacacatatggttacattgaattatgtcatttttt 30606105  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 32915610 - 32915654
Alignment:
Q  131 accgacacatatagttacattgaattatgtcattttttaaattat 175  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||    
T  32915610 accgaaacatataattacattgaattatgtgattttttaaattat 32915654  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 5555136 - 5555180
Alignment:
Q  131 accgacacatatagttacattgaattatgtcattttttaaattat 175  Q
    ||||||||||||| ||||||| |||||| | ||||||||||||||    
T  5555136 accgacacatataattacattaaattatcttattttttaaattat 5555180  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 25390890 - 25390930
Alignment:
Q  131 accgacacatatagttacattgaattatgtcattttttaaa 171  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  25390890 accgacacatatggttatattgaattatgtcattttctaaa 25390930  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 14692517 - 14692470
Alignment:
Q  128 gataccgacacatatagttacattgaattatgtcattttttaaattat 175  Q
    ||||||||||| |||||||||| ||||||||||||||| | |||||||    
T  14692517 gataccgacacctatagttacactgaattatgtcatttctcaaattat 14692470  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 18964232 - 18964192
Alignment:
Q  131 accgacacatatagttacattgaattatgtcattttttaaa 171  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  18964232 accgacacatataattacattgaattatgtgattttctaaa 18964192  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 41319316 - 41319369
Alignment:
Q  133 cgacacatatagttacattgaattatgtcatttttt-aaattatcattgatgtc 185  Q
    ||||||||| | |||||||||||||||||||||||| ||||||| |||| ||||    
T  41319316 cgacacatacaattacattgaattatgtcattttttcaaattattattggtgtc 41319369  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 35222993 - 35222953
Alignment:
Q  131 accgacacatatagttacattgaattatgtcattttttaaa 171  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  35222993 accgacacatataattacattgaattatgtgattttctaaa 35222953  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 44524 - 44564
Alignment:
Q  126 acgataccgacacatatagttacattgaattatgtcatttt 166  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  44524 acgataccgacacatataattacactgaattatgtgatttt 44564  T

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