View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_25 (Length: 260)
Name: NF16105_low_25
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 12101584 - 12101717
Alignment:
| Q |
36 |
tcaacaagttacaagcatatagataacaaacaaaaacaaaactggtgcggtttaactacgaatacaatgaga-nnnnnnnaaaaggacaagcacaagatg |
134 |
Q |
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| T |
12101584 |
tcaacaagttgcaagcatatagataacaaacaaaatcaaaactggtgcggtttaactatgaatacaatgagattttttttaaaaggacaagcacaagatg |
12101683 |
T |
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| Q |
135 |
tataaaaagaacaaaaagatagatacttgaaatc |
168 |
Q |
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| T |
12101684 |
tataaaaagaacaaaaagacagatacttgaaatc |
12101717 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 12102737 - 12102822
Alignment:
| Q |
166 |
atctgattcactacaaatagcaacttggagaagtaatcactgattctttgatcattctccatcaacatcaactcatactttcttct |
251 |
Q |
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| T |
12102737 |
atctgattcactacaaatcgcaacttggagaagtaatcactgattctttgatcattctccatcaacatcaactcatacttccttct |
12102822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 26627979 - 26628066
Alignment:
| Q |
166 |
atctgattcactacaaatagcaacttggagaagtaatcactgattctttgatcattctccatcaacatcaactcatactttcttctca |
253 |
Q |
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| T |
26627979 |
atcttattcactgcagatagcaattgggagaagtaatcattgattctttgatcatcttccatcaacatcaactcatacttccttctca |
26628066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 18191842 - 18191760
Alignment:
| Q |
166 |
atctgattcactacaaatagcaacttggagaagtaatcactgattctttgatcattctccatcaacatcaactcatactttct |
248 |
Q |
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| T |
18191842 |
atctgattcactacagattgcagtttgaagatgtaatcactgatcctttgatcatcctccatcaacatcaactcatactttct |
18191760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 11748958 - 11749043
Alignment:
| Q |
166 |
atctgattcactacaaatagcaacttggagaagtaatcactgattctttgatcattctccatcaacatcaactcatactttcttct |
251 |
Q |
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||||||||||||||| ||||||| ||| ||| ||||||| |||| |||||||||| ||||||||||||||||||||| || ||||| |
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| T |
11748958 |
atctgattcactacatatagcaatttgtagatgtaatcaatgatcctttgatcatgctccatcaacatcaactcatatttccttct |
11749043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 21462758 - 21462703
Alignment:
| Q |
198 |
gtaatcactgattctttgatcattctccatcaacatcaactcatactttcttctca |
253 |
Q |
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| T |
21462758 |
gtaatcattgatcctttgatcatcttccatcatcatcaactcatattttcttctca |
21462703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 32371700 - 32371779
Alignment:
| Q |
166 |
atctgattcactacaaatagcaacttggagaagtaatcactgattctttgatcattctccatcaacatcaactcatactt |
245 |
Q |
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||||||||||||||| ||| || |||||||| | ||||| |||| |||||||||| |||||||||||||||||||||||| |
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| T |
32371700 |
atctgattcactacagataacagcttggagatgcaatcattgatcctttgatcatcctccatcaacatcaactcatactt |
32371779 |
T |
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