View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_low_26 (Length: 256)

Name: NF16105_low_26
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_low_26
NF16105_low_26
[»] chr3 (6 HSPs)
chr3 (1-221)||(49582610-49582829)
chr3 (34-107)||(38183115-38183189)
chr3 (34-107)||(17731076-17731150)
chr3 (34-107)||(19032307-19032381)
chr3 (2-107)||(3371413-3371522)
chr3 (74-106)||(3372378-3372410)
[»] chr8 (3 HSPs)
chr8 (26-158)||(7278017-7278144)
chr8 (34-107)||(392318-392392)
chr8 (34-107)||(7284614-7284688)
[»] chr5 (6 HSPs)
chr5 (1-107)||(41341044-41341150)
chr5 (34-107)||(35428332-35428406)
chr5 (34-107)||(35429915-35429989)
chr5 (27-107)||(7400477-7400558)
chr5 (38-107)||(18009237-18009307)
chr5 (61-107)||(30921629-30921676)
[»] chr7 (6 HSPs)
chr7 (34-107)||(5448871-5448945)
chr7 (37-107)||(5439861-5439932)
chr7 (34-107)||(5438868-5438942)
chr7 (33-158)||(15588619-15588739)
chr7 (34-107)||(5447878-5447952)
chr7 (33-104)||(15589801-15589873)
[»] chr6 (6 HSPs)
chr6 (30-156)||(32342117-32342238)
chr6 (34-107)||(14763838-14763912)
chr6 (34-107)||(21118721-21118795)
chr6 (37-107)||(14766415-14766486)
chr6 (27-112)||(20727510-20727596)
chr6 (34-107)||(21118439-21118513)
[»] chr1 (4 HSPs)
chr1 (34-107)||(6138233-6138307)
chr1 (34-107)||(6139854-6139928)
chr1 (27-108)||(43834986-43835068)
chr1 (1-107)||(52022130-52022236)
[»] chr4 (4 HSPs)
chr4 (1-196)||(14508732-14508921)
chr4 (27-107)||(10550026-10550107)
chr4 (3-106)||(31322582-31322685)
chr4 (33-158)||(41848309-41848429)
[»] chr2 (3 HSPs)
chr2 (55-107)||(31073691-31073744)
chr2 (34-107)||(4660118-4660191)
chr2 (27-155)||(20594648-20594771)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49582610 - 49582829
Alignment:
Q  1 ggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaacttatatctaacttagtttaaatatttgc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49582610 ggggaagaccaatgttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaacttatatctaacttagtttaaatatttgc 49582709  T
Q  101 tttgtgattgtgatagtgtggttgtaccggagcattggagtgagagtgagagaagtctttgagtcgtnnnnnnnttcacatagtaataattatttgattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||| |||| |||| |||    
T  49582710 tttgtgattgtgatagtgtggttgtaccggagcattggagtgagagtgagagaagtctttgtgtcgtaaaaaatttcacatagtaa-aattctttggttt 49582808  T
Q  201 tatagacaacggtcatgattt 221  Q
    |||||||||||||||||||||    
T  49582809 tatagacaacggtcatgattt 49582829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 38183189 - 38183115
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  38183189 ttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttaggttaaatatttgctttgtga 38183115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 17731150 - 17731076
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||| || |||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  17731150 ttctttattgttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatattttctttgtga 17731076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 19032381 - 19032307
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||| || |||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  19032381 ttctttattgttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatattttctttgtga 19032307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 3371413 - 3371522
Alignment:
Q  2 gggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcacttta-----acttatatctaacttagtttaaatat 96  Q
    ||||||||||||| || |||| || ||||| |||| |||||||||||||||| ||||| ||| ||||||     | |||||||| ||||| |||||||||    
T  3371413 gggaagaccaaggctatatattaa-acctaggttccttgtttttagatgcatcagtcaatagaactttaaacttatttatatctgacttaatttaaatat 3371511  T
Q  97 ttgctttgtga 107  Q
    |||||||||||    
T  3371512 ttgctttgtga 3371522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 3372378 - 3372410
Alignment:
Q  74 tatatctaacttagtttaaatatttgctttgtg 106  Q
    ||||||| |||||||||||||||||||||||||    
T  3372378 tatatctgacttagtttaaatatttgctttgtg 3372410  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 7278144 - 7278017
Alignment:
Q  26 gacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttg 124  Q
    |||||| ||||||||||| ||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||      |||| ||| || |||    
T  7278144 gacctaggttctttgtttgtagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgcttt------gtgagagtatgattg 7278051  T
Q  125 taccggagcattggagtgagagtgagagaagtct 158  Q
    ||| |||||||||| |||||||||||||||||||    
T  7278050 tactggagcattggggtgagagtgagagaagtct 7278017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 392392 - 392318
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  392392 ttctttgtttttagatacatcagttagtagcactttaagcttatatctgacttagtttaaatatttgctttgtga 392318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 7284688 - 7284614
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||||||||| |||  | | |||| |||||||| ||||||||| |||||||||||||||||| |||||||    
T  7284688 ttctttgtttttagacgcaccaattagtaccactttaaacttatatctgacttagtttaaatatttgttttgtga 7284614  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41341044 - 41341150
Alignment:
Q  1 ggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttg 99  Q
    |||||||||||| |||| |||| || |||||  |||||||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  41341044 ggggaagaccaaagttatatattaa-acctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatgtttg 41341142  T
Q  100 ctttgtga 107  Q
    ||||||||    
T  41341143 ctttgtga 41341150  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 35428406 - 35428332
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  35428406 ttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgttttgtga 35428332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 35429989 - 35429915
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||||||||| |||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  35429989 ttctttgtttttagaagcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgctttgtga 35429915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 7400558 - 7400477
Alignment:
Q  27 acctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||| ||||||||||||||||||||   |||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  7400558 acctaggttctttgtttttagatgcaccggtcagtagcactttaagcttatatctgacttagtttaaatatttgttttgtga 7400477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 18009237 - 18009307
Alignment:
Q  38 ttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||| |||||  ||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||    
T  18009237 ttgtttttaaatgcaccagtcagtagcactttaaacttatatttgacttagtttaaatattttctttgtga 18009307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 30921676 - 30921629
Alignment:
Q  61 tagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  30921676 tagcactttaaacttatatctaagttagtttaaataattgctttgtga 30921629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 5448945 - 5448871
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  5448945 ttctttgtttttagatgcaccagtcagtagcactttaagcttatatctaacttagtttaaatattttctttgtga 5448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 5439932 - 5439861
Alignment:
Q  37 tttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  5439932 tttgtttttagatgcaccagtcagtagcactttaagcttatatctaactcagtttaaatattttctttgtga 5439861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 5438942 - 5438868
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  5438942 ttctttgtttttagatgcaccagtcaatagcactttaagcttatatataacttagtttaaatatttgttttgtga 5438868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 15588739 - 15588619
Alignment:
Q  33 gttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttgtaccgga 131  Q
    ||||||||||||||||||||   ||||||||||| |||| ||||||| | |||||||||||||||||| |      |||||| ||| ||||||||| ||     
T  15588739 gttctttgtttttagatgcacctgtcagtagcacgttaagcttatatttgacttagtttaaatatttgtt------ttgtgagagtttggttgtactggg 15588646  T
Q  132 gcattggagtgagagtgagagaagtct 158  Q
    ||||||| || ||||||||||||||||    
T  15588645 gcattggggtaagagtgagagaagtct 15588619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 5447952 - 5447878
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||| |||||||||  ||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  5447952 ttctttgttcttagatgcaccagtcaatagcactttaagcttatatataacttagtttaaatatttgttttgtga 5447878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 15589873 - 15589801
Alignment:
Q  33 gttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttg 104  Q
    ||||||||| ||||||||||   ||||||||||| |||| ||||||||| |||||| || |||||||||||||    
T  15589873 gttctttgtatttagatgcacaggtcagtagcacattaagcttatatcttacttaggttcaatatttgctttg 15589801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 32342117 - 32342238
Alignment:
Q  30 taagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttgtacc 128  Q
    |||||||||||||||||||||||   ||||||| |||||||| ||||||||| |||||||||||||||||| |      |||||| |||||||||||||     
T  32342117 taagttctttgtttttagatgcaccggtcagtaacactttaagcttatatctgacttagtttaaatatttgtt------ttgtgagagtgtggttgtact 32342210  T
Q  129 ggagcattggagtgagagtgagagaagt 156  Q
    || ||||| | |||||||||||||||||    
T  32342211 ggggcattcgggtgagagtgagagaagt 32342238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 14763912 - 14763838
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||||||||||| |  ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  14763912 ttctttgtttttagatgtaccagtcagtagcactttaagcttgtatctgacttagtttaaatatttgctttgtga 14763838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 21118795 - 21118721
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||||||| | |||||||    
T  21118795 ttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatattagttttgtga 21118721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 14766486 - 14766415
Alignment:
Q  37 tttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||||||||||| ||||||    
T  14766486 tttgtttttagatgcactagtcaatagcactttaagcttgtatctgacttagtttaaatatttgcattgtga 14766415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 20727510 - 20727596
Alignment:
Q  27 acctaagttctttgtttttagatgcattagtcagtagcacttta-acttatatctaacttagtttaaatatttgctttgtgattgtg 112  Q
    ||||| |||||||||||||||||||| || ||| ||||||||||  ||||||||| |||||| |||||||||| |||||||| ||||    
T  20727510 acctatgttctttgtttttagatgcactaatcaatagcactttatgcttatatctgacttagattaaatattttctttgtgagtgtg 20727596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 21118513 - 21118439
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||||| |||||||||||||||| | |||||||    
T  21118513 ttctttgtttttagatgcaccagtcaatagcactttaagcttatatctgacttagtttaaatattagttttgtga 21118439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 6138233 - 6138307
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||| ||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  6138233 ttctttgttttttgatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgctttgtga 6138307  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 6139854 - 6139928
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||||||||||   |||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  6139854 ttctttgtttttagatgcaccggtcaataacactttaagcttatatctaacttagtttaaatatttgctttgtga 6139928  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 43834986 - 43835068
Alignment:
Q  27 acctaagttctttgtttttagatgcattagtcagtagcacttt-aacttatatctaacttagtttaaatatttgctttgtgat 108  Q
    |||||||||||| ||||| |||||||| ||||||||||||||| |||||| |||| |||| ||||||||||||| ||||||||    
T  43834986 acctaagttcttagttttaagatgcatcagtcagtagcactttaaacttacatctgacttggtttaaatatttgttttgtgat 43835068  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 52022130 - 52022236
Alignment:
Q  1 ggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttg 99  Q
    |||||||||||||| || ||||  | |||||  |||||||||||||||||||  ||||| ||||||||||| || |||||| ||||||||||||||||||    
T  52022130 ggggaagaccaaggctatatattga-acctagtttctttgtttttagatgcaccagtcattagcactttaagctcatatctgacttagtttaaatatttg 52022228  T
Q  100 ctttgtga 107  Q
     |||||||    
T  52022229 ttttgtga 52022236  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14508732 - 14508921
Alignment:
Q  1 ggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttg 99  Q
    |||||||||||||| || ||||  | ||||| |||||| ||||||||||| |  ||||||||||||||||| ||||||||| || |||||||||||||||    
T  14508732 ggggaagaccaaggctatatattga-acctaggttcttagtttttagatgtaccagtcagtagcactttaagcttatatctgacctagtttaaatatttg 14508830  T
Q  100 ctttgtgattgtgatagtgtggttgtaccggagcattggagtgagagtgagagaagtctttgagtcgtnnnnnnnttcacatagtaataattatttg 196  Q
    ||      |||||| |||||||||||||  | ||  ||| ||||||||||||||||||| || || ||       ||||||||||||||||| ||||    
T  14508831 ct------ttgtgagagtgtggttgtactagggccatggggtgagagtgagagaagtctatgtgttgtaaaaaaattcacatagtaataattctttg 14508921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 10550107 - 10550026
Alignment:
Q  27 acctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||  |||||||| ||| |||||||||||||| |||||||    
T  10550107 acctaggttctttgtttttagatgcaccagtcagtagcactttaagtttatatctgactcagtttaaatatttgttttgtga 10550026  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 31322582 - 31322685
Alignment:
Q  3 ggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgct 101  Q
    ||||||||||||||| ||||   |||||| ||||||||||||||||||||  | ||| | ||||||||| ||||||||| ||||||||||||||||| ||    
T  31322582 ggaagaccaaggttatatattg-gacctaggttctttgtttttagatgcaccattcaatggcactttaagcttatatctgacttagtttaaatattttct 31322680  T
Q  102 ttgtg 106  Q
    |||||    
T  31322681 ttgtg 31322685  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 41848429 - 41848309
Alignment:
Q  33 gttctttgtttttagatgcattagtcagtagca-ctttaacttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttgtaccgga 131  Q
    ||||||||||||||||||||| |||||||||||  |||| ||||||||| | |||||||||||||||| |      || ||| ||||||||||||| |||    
T  41848429 gttctttgtttttagatgcatcagtcagtagcatttttagcttatatctgatttagtttaaatatttgtt------ttatgaaagtgtggttgtactgga 41848336  T
Q  132 gcattggagtgagagtgagagaagtct 158  Q
     |||||| |  ||||||||||||||||    
T  41848335 acattggggctagagtgagagaagtct 41848309  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 31073744 - 31073691
Alignment:
Q  55 agtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 107  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  31073744 agtcagtagcattttaaacttatatctaacttagtttaaatatttgttttgtga 31073691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 4660191 - 4660118
Alignment:
Q  34 ttctttgtttttagatgcattagtcagtagcactttaac-ttatatctaacttagtttaaatatttgctttgtga 107  Q
    |||||||||||| ||||||   ||||||||||||||||  |||||||| |||||||||||||||||| |||||||    
T  4660191 ttctttgttttt-gatgcaccggtcagtagcactttaagattatatctgacttagtttaaatatttggtttgtga 4660118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 20594648 - 20594771
Alignment:
Q  27 acctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttgt 125  Q
    ||||| ||||||| ||||||||||||   |||| || |||| ||| ||||||||| || ||||||||||||||| |      |||||| |||||||||||    
T  20594648 acctaggttctttatttttagatgcaccggtcaataacactctaagcttatatctgacatagtttaaatatttgtt------ttgtgagagtgtggttgt 20594741  T
Q  126 accggagcattggagtgagagtgagagaag 155  Q
    || |||| ||||| |||||| |||||||||    
T  20594742 actggaggattggggtgagaatgagagaag 20594771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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