View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_low_28 (Length: 250)

Name: NF16105_low_28
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_low_28
NF16105_low_28
[»] chr8 (5 HSPs)
chr8 (20-250)||(23132702-23132932)
chr8 (20-187)||(14759722-14759889)
chr8 (20-187)||(26973253-26973420)
chr8 (20-250)||(26587024-26587254)
chr8 (20-92)||(38348267-38348339)
[»] chr3 (12 HSPs)
chr3 (20-250)||(11896948-11897178)
chr3 (20-247)||(26432818-26433045)
chr3 (33-247)||(23424311-23424525)
chr3 (24-244)||(11889865-11890085)
chr3 (20-247)||(17718481-17718708)
chr3 (20-247)||(19019710-19019937)
chr3 (20-247)||(38647305-38647532)
chr3 (33-247)||(53608423-53608637)
chr3 (24-105)||(49150035-49150116)
chr3 (20-160)||(15473656-15473795)
chr3 (21-91)||(3659894-3659964)
chr3 (20-89)||(55025080-55025149)
[»] chr1 (9 HSPs)
chr1 (20-250)||(20284649-20284879)
chr1 (20-243)||(31325079-31325302)
chr1 (20-247)||(50451695-50451922)
chr1 (20-247)||(50236688-50236915)
chr1 (20-247)||(43298158-43298385)
chr1 (28-250)||(10103800-10104022)
chr1 (20-105)||(1524767-1524852)
chr1 (20-106)||(23465137-23465224)
chr1 (195-247)||(5193219-5193271)
[»] chr2 (9 HSPs)
chr2 (20-250)||(14653797-14654027)
chr2 (20-247)||(35135342-35135569)
chr2 (20-247)||(40327975-40328202)
chr2 (20-247)||(19265213-19265440)
chr2 (33-246)||(573002-573215)
chr2 (20-187)||(16322246-16322413)
chr2 (20-169)||(177296-177445)
chr2 (20-187)||(42403400-42403567)
chr2 (21-91)||(39012328-39012398)
[»] chr5 (4 HSPs)
chr5 (20-247)||(7816932-7817159)
chr5 (33-105)||(23944828-23944900)
chr5 (20-247)||(6641139-6641366)
chr5 (20-104)||(23620887-23620971)
[»] chr4 (5 HSPs)
chr4 (20-247)||(54477530-54477758)
chr4 (20-247)||(3881512-3881742)
chr4 (33-105)||(33803788-33803860)
chr4 (20-104)||(48847971-48848055)
chr4 (20-104)||(46784742-46784826)
[»] chr6 (4 HSPs)
chr6 (20-247)||(11296925-11297152)
chr6 (33-247)||(24893962-24894176)
chr6 (20-233)||(35233286-35233499)
chr6 (20-247)||(32725587-32725814)
[»] scaffold0036 (1 HSPs)
scaffold0036 (20-247)||(75707-75932)
[»] chr7 (4 HSPs)
chr7 (33-250)||(23207989-23208206)
chr7 (24-244)||(27781759-27781979)
chr7 (20-101)||(16770233-16770314)
chr7 (20-104)||(1579428-1579512)
[»] scaffold0214 (1 HSPs)
scaffold0214 (20-97)||(8764-8841)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 23132932 - 23132702
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132932 tattggtccctatcaaagcagctttctgcttggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 23132833  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132832 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 23132733  T
Q  220 acatcaccatcaagctcatcatgcattgcgt 250  Q
    |||||||||||||| ||||||||||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgt 23132702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 14759722 - 14759889
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||||||||||| |   || |||| |    
T  14759722 tattggcccctaccaaagcagttttctgcctgggaggggcacttctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag 14759821  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 187  Q
    |||||||| |  ||||||| |||  ||||| |||| |||||||| ||||| || |||||||| |||||    
T  14759822 aagaaggggtttgtagctttcaaaattgacctggaaaaagcttttgacaaagtaaactgggaattcct 14759889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 26973253 - 26973420
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||| |||||||| ||||||||||| ||||||||  | |||||||| ||||||||||||||||| ||||||||||||| |   || |||| |    
T  26973253 tattggcccctaccaaagcagttttctgcctgggaggggcacctctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag 26973352  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 187  Q
    |||||||| |  ||||||| ||| |||||| |||| |||||||| ||||| || |||||||| |||||    
T  26973353 aagaaggggtttgtagctttcaaacttgacctggaaaaagcttttgacaaagtaaactgggaattcct 26973420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 26587024 - 26587254
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||||||||| |||| ||| |||||||| ||||||||||||   || |||||| |||||||||||||||||  ||| || |||| | | ||||| |||    
T  26587024 tattggtccctaccaaatcagttttctgccaggtaggggcacttatgacaactcttttgttttgcaggaaattgctcactttatgaggaaatctaagagg 26587123  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||| || || || |||| |||||||||  | |||||||| || ||||| || |||||||| || || |  |  || || |||||||| ||||||||      
T  26587124 aagaaaggctatgttgctttcaagcttgatcttgagaaagcatttgacaatgttaactgggagtttcttaatacttgtcttcatgatttcggatttcctg 26587223  T
Q  220 acatcaccatcaagctcatcatgcattgcgt 250  Q
    ||  | ||||||| |||||||||||||||||    
T  26587224 acgccgccatcaaactcatcatgcattgcgt 26587254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 38348267 - 38348339
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaatt 92  Q
    |||||| ||||||||||||||||| |||||||||||||| ||| | ||||| |||||| ||||||||||||||    
T  38348267 tattggcccctatcaaagcagcttcctgcctggtaggggaacttctgataattctattattttgcaggaaatt 38348339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 11896948 - 11897178
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11896948 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 11897047  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11897048 aagaagggttacgtagcttacaagcttgacttggagaaagcttttgacaacgtcaactaggatttcctaagcaactgcctccatgattttggatttccga 11897147  T
Q  220 acatcaccatcaagctcatcatgcattgcgt 250  Q
    |||||||||||||||||||||||||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgt 11897178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 26433045 - 26432818
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| |||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||   || || |||    
T  26433045 tattggcccctatcaaagcagtttcctgcctggtaggggtaccgcagataactctattgttttgcaggaaatttttcatttcatgaagagatcgaagagg 26432946  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    || ||||||| |||||||| |||||||||  | ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||      
T  26432945 aaaaagggtttcgtagctttcaagcttgatctagagaaagcttttgacaacgtcaactgggaatttctaagcaactgcctccatgattttgggtttccag 26432846  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    ||||||||||||| ||||||||||||||    
T  26432845 acatcaccatcaaactcatcatgcattg 26432818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 23424311 - 23424525
Alignment:
Q  33 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 132  Q
    |||||||| ||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| |    
T  23424311 caaagcagatttctgcctagtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg 23424410  T
Q  133 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 232  Q
    | |||| |||||| |||||||||||||| ||||| || ||||  ||||||||||| |     ||||| || || ||||| |||||  |||||||||||||    
T  23424411 ttgctttcaagctagacttggagaaagcattcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa 23424510  T
Q  233 gctcatcatgcattg 247  Q
    ||||||||| |||||    
T  23424511 gctcatcatacattg 23424525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 11890085 - 11889865
Alignment:
Q  24 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga 123  Q
    |||||||| ||||||||||| ||||| ||||||||||| || || ||| |||||||||||||||||||| | || || ||| ||   ||||| | |||||    
T  11890085 ggtccctaccaaagcagcttcctgccaggtaggggcacggctgacaacactattgttttgcaggaaattgtacactttatgtagagatctaagaagaaga 11889986  T
Q  124 agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacat 223  Q
    | || || ||||||| ||| |||||| | ||||||||||| || || ||||||||||||||| ||||    ||||||||||| ||||| || ||  | ||    
T  11889985 aaggctatgtagctttcaaacttgacctagagaaagcttttgataatgtcaactgggatttcttaagtgcttgcctccatgactttggtttcccagatat 11889886  T
Q  224 caccatcaagctcatcatgca 244  Q
     ||||| ||||||||||||||    
T  11889885 taccataaagctcatcatgca 11889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 17718708 - 17718481
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| |||||     ||||| | |    
T  17718708 tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag 17718609  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    || || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | |   || || || |||||||| || |||     
T  17718608 aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg 17718509  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    || |||||||||||||||||||||||||    
T  17718508 acgtcaccatcaagctcatcatgcattg 17718481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 19019937 - 19019710
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| |||||     ||||| | |    
T  19019937 tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag 19019838  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    || || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | |   || || || |||||||| || |||     
T  19019837 aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg 19019738  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    || |||||||||||||||||||||||||    
T  19019737 acgtcaccatcaagctcatcatgcattg 19019710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 38647532 - 38647305
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| | |||||||||||  |||||||||||||| || ||  | ||||| || |||||||||||||||||| | ||||||||||   | || ||||      
T  38647532 tattggcctctatcaaagcatttttctgcctggtagaggaacatctgataattcaattgttttgcaggaaattgtacatttcatgagaaaatccaaaaat 38647433  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    || |||||||| ||| | | ||| |||||| |||| |||||||| || || ||||||||||| ||||| |     ||||| ||||||||||| |||||      
T  38647432 aaaaagggttatgtaacattcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttccag 38647333  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    ||||||||||||||||||||||||||||    
T  38647332 acatcaccatcaagctcatcatgcattg 38647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 53608637 - 53608423
Alignment:
Q  33 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 132  Q
    |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||  |||||    || || | ||| || || || |    
T  53608637 caaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaattattcattatatgaaaagatcaaagaagaaaaaaggctatg 53608538  T
Q  133 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 232  Q
    | |||| |||||| ||  | ||||||||||| || || ||||| |||||||| || |     ||||| || |||||||| || ||  |||||||||||||    
T  53608537 tggctttcaagctcgatcttgagaaagcttttgataatgtcaattgggattttcttaatttttgcctacaggattttggtttcccagacatcaccatcaa 53608438  T
Q  233 gctcatcatgcattg 247  Q
    |||||||||||||||    
T  53608437 gctcatcatgcattg 53608423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 49150116 - 49150035
Alignment:
Q  24 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 105  Q
    ||||||||| | ||||| |||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  49150116 ggtccctattagagcagttttctgcctggtaggggcactaatgacaactcaattgttttgcaggaaattgttcatttcatga 49150035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 15473795 - 15473656
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||||||||| || ||||||||||||| ||| ||| | |||||||| |||||||||||||||||| | ||||| |||||    || ||||||    
T  15473795 tattggcccctatcaaagtagttttctgcctggta-gggtacttctgataactcaattgttttgcaggaaattgtacattttatgaaaagatccaaaagg 15473697  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagc 160  Q
    || |||||||| || |||| || ||||||| |||| |||||    
T  15473696 aaaaagggttatgtggctttcaggcttgacctggaaaaagc 15473656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 3659964 - 3659894
Alignment:
Q  21 attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat 91  Q
    ||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||||    
T  3659964 attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat 3659894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 55025149 - 55025080
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaa 89  Q
    |||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||    
T  55025149 tattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcaattgttttgcaggaa 55025080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 20284649 - 20284879
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20284649 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaaacactctaaaagg 20284748  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20284749 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggattttctaagcaactgcctccatgattttggatttccga 20284848  T
Q  220 acatcaccatcaagctcatcatgcattgcgt 250  Q
    |||||||||||||||||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgt 20284879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 31325302 - 31325079
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||| | |||||| ||||||||||||||||| ||| | |||||||| |||||||||||||||||| | || |||||||     || || | |    
T  31325302 tattggcccctaccgaagcagttttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattgtccacttcatgagaagatccaagaag 31325203  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||| || || ||||| ||||||||||| |     |||||||||||||| || |||||      
T  31325202 aagaagggttacgtagctttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaattcttgcctccatgatttcggttttccag 31325103  T
Q  220 acatcaccatcaagctcatcatgc 243  Q
    ||||||| ||||||||||||||||    
T  31325102 acatcacaatcaagctcatcatgc 31325079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 50451695 - 50451922
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| || || |||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||| |||| | | ||||| | |    
T  50451695 tattggcccttaccaaagcagctttctgcctagtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaggaagtctaagaag 50451794  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    || || ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| || |     ||||| ||||| ||||| ||||||     
T  50451795 aaaaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttggttttccgg 50451894  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    ||||||||||||| || |||||||||||    
T  50451895 acatcaccatcaaacttatcatgcattg 50451922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 50236915 - 50236688
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga-agcactctaaaag 118  Q
    ||||||||||||||||||||  ||||||||||||||||| ||  | |||||||| |||||||||||||||||| |||||||||||| |  | || |||||    
T  50236915 tattggtccctatcaaagcatttttctgcctggtaggggtacatctgataactcgattgttttgcaggaaattgttcatttcatgagaagattc-aaaag 50236817  T
Q  119 gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg 218  Q
     |||||||| || |||||||  |||||||| ||||| || ||||| || || || || | ||| ||||| |     || |||||||||||||||||||||    
T  50236816 aaagaagggctatgtagcttttaagcttgatttggaaaaggcttttgataatgttaattaggacttcctcaattcttgtctccatgattttggatttccg 50236717  T
Q  219 aacatcaccatcaagctcatcatgcattg 247  Q
     ||||||||| ||| ||||||||||||||    
T  50236716 gacatcaccaccaaactcatcatgcattg 50236688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 43298158 - 43298385
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| || || |||||||| ||||||||| ||||||| ||| | |||||||| |||||||||||||||||  ||||||| ||||     ||||||| |    
T  43298158 tattggcccttaccaaagcagttttctgcctagtaggggaacttctgataactcaattgttttgcaggaaatagttcattttatgagaagatctaaaaag 43298257  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    |||||||| || ||||| | ||| |||||| || ||||||||||  | || ||||| |||||||| ||||     ||||||  ||||||||||||  |||    
T  43298258 aagaagggatatgtagccttcaaacttgacctgaagaaagcttttaataatgtcaaatgggattttctaaattcttgcctcattgattttggattctcga 43298357  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    |||||||||| ||||| |||||||||||    
T  43298358 acatcaccatgaagcttatcatgcattg 43298385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 10104022 - 10103800
Alignment:
Q  28 cctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaaggg 127  Q
    |||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||| ||||||| | | | ||||| | |||||||||    
T  10104022 cctatcaaagtagctttctgcctggtaggggaacggctgataactcaattgttttgcaggaaattatttatttcataaggaaatctaagaagaagaaggg 10103923  T
Q  128 ttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcacc 227  Q
     || || |||| |||||| || || |||||| || | ||||| ||||  ||||| ||||| |     ||||| || || ||||||||| |  | ||||||    
T  10103922 ctatgttgctttcaagctcgatttagagaaaactattgacaatgtcagatgggacttccttaattcttgccttcaagagtttggattttcagatatcacc 10103823  T
Q  228 atcaagctcatcatgcattgcgt 250  Q
    ||||| || ||||||||||||||    
T  10103822 atcaaacttatcatgcattgcgt 10103800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 1524767 - 1524852
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 105  Q
    |||||| ||||||||||| || ||||||||||||||||| ||| | ||||| ||||||||||||||||||||| | || |||||||    
T  1524767 tattggcccctatcaaagtagttttctgcctggtaggggaacttctgataattctattgttttgcaggaaattgtccacttcatga 1524852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 23465137 - 23465224
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactc-tattgttttgcaggaaattattcatttcatgaa 106  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| | || ||||| | || ||||| |||||||| |||||||||||||    
T  23465137 tattggtccctatcagagcagttttctgcctggtaggggcactactgacaactcatttttttttggaggaaattgttcatttcatgaa 23465224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 5193271 - 5193219
Alignment:
Q  195 tgcctccatgattttggatttccgaacatcaccatcaagctcatcatgcattg 247  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  5193271 tgcctccttgattttggatttacgaacatcaccatcaagcttatcatgcattg 5193219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 14654027 - 14653797
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  14654027 tattggtccctatcaaagcagttttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcgatctaagagg 14653928  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    |||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |    
T  14653927 aagaagggatacgtagctttcaagcttgatttggagaaagcattcgacaacgtcaactgggaattcctaaacaactgcctccatgattttggatttccta 14653828  T
Q  220 acatcaccatcaagctcatcatgcattgcgt 250  Q
    |||||||||||||||||||||||||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgt 14653797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 35135569 - 35135342
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||| ||||||| |||||||| ||| ||||||||||||| ||  |||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  35135569 tattagtccctaccaaagcagttttttgcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 35135470  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||||||||  ||||||| ||||||||| || ||||||||||| ||||||||||||||||| |||||  |||  |||||||| ||||| || || ||      
T  35135469 aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggacttccttcgcatttgcctccaggatttcggcttcccag 35135370  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    |||| |||||||| ||||||||||||||    
T  35135369 acattaccatcaaactcatcatgcattg 35135342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 40327975 - 40328202
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||||||||| ||||| || ||| | ||||||||||| ||  |||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  40327975 tattggtccctaccaaagtagtttttttcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 40328074  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||||||||  ||||||| ||||||||| || ||||||||||| ||||||||||||||||| |||||  |||  |||||||| ||||| || || ||      
T  40328075 aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggaattccttcgcatttgcctccaggatttcggcttcccag 40328174  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    |||| |||||||| ||||||||||||||    
T  40328175 acattaccatcaaactcatcatgcattg 40328202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 19265213 - 19265440
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||||||||| |||||||  ||| ||||||||||||| ||   ||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  19265213 tattggtccctaccaaagcaattttttgcctggtaggggtacccaagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 19265312  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||||||||  || |||| ||||||||| || ||||||||||| ||||||||||||| ||| |||||  |||  |||||||| ||||| || || || |    
T  19265313 aagaagggttttgtggctttcaagcttgatttagagaaagcttttgacaacgtcaacttggacttccttcgcatttgcctccaggatttcggcttcccaa 19265412  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    |||| |||||||| ||||||||||||||    
T  19265413 acattaccatcaaactcatcatgcattg 19265440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 246
Target Start/End: Original strand, 573002 - 573215
Alignment:
Q  33 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 132  Q
    |||||||| ||||||| ||||||||  ||| | |||||||| |||||||||||||||||| ||||||||||||   | || |||| ||||||||| || |    
T  573002 caaagcagttttctgcatggtagggaaacttctgataactcaattgttttgcaggaaattgttcatttcatgagaaaatcaaaaaagaagaaggggtatg 573101  T
Q  133 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 232  Q
    | |||| |||||| |||||||| |||||||| |  || ||||  ||||||||||| |    |||||| ||||| |||||||||||  |||||||||||||    
T  573102 ttgctttcaagctcgacttggaaaaagcttttggtaatgtcagatgggatttccttaattcctgccttcatgagtttggatttccagacatcaccatcaa 573201  T
Q  233 gctcatcatgcatt 246  Q
     || ||||||||||    
T  573202 acttatcatgcatt 573215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 16322246 - 16322413
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||| ||| |||||||||||||| | ||||| ||||| |  || ||||||    
T  16322246 tattggcccctatcaaagtagctttctacctggtaggggtactgctgacaactcaattattttgcaggaaattttacattttatgaaacgatccaaaagg 16322345  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 187  Q
    || ||||| ||||| |||| |||||||||| |||| ||||| || || || || || |||||||||||    
T  16322346 aaaaagggctacgtggctttcaagcttgacctggaaaaagcgtttgataatgttaattgggatttcct 16322413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 177296 - 177445
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||||||||| |||||||| || ||||  |||||||||||| | || |||||||||||||||||||||||| ||||||| |||  |   || ||||||    
T  177296 tattggtccctaccaaagcagtttcctgcaaggtaggggcacttctgacaactctattgttttgcaggaaattgttcattttatgcggagatcaaaaagg 177395  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaa 169  Q
    || || |||||||| |||| ||| |||||  | ||||||||||| |||||    
T  177396 aaaaaaggttacgttgctttcaaacttgatcttgagaaagcttttgacaa 177445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 42403567 - 42403400
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||  ||||| || ||||| ||||||||||| ||| | ||||| || |||||||||||||||||||| ||||| |||||    || ||||||    
T  42403567 tattggcccctgccaaagtagttttctacctggtaggggtacttctgataattcaattgttttgcaggaaattatacattttatgaaaagatccaaaagg 42403468  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 187  Q
    || |||||||| || || | |||||||||| |||| ||||| || || || ||||||||||| |||||    
T  42403467 aaaaagggttatgtggccttcaagcttgacctggaaaaagcgtttgataatgtcaactgggaattcct 42403400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 39012328 - 39012398
Alignment:
Q  21 attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat 91  Q
    ||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||||    
T  39012328 attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat 39012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 7816932 - 7817159
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| || || |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||  |||||||||    
T  7816932 tattggcccttaccaaagcagttttctgcctggtaggggtacttcagataactctattgttttgcaggaaattttgcatttcatgaagcggtctaaaagg 7817031  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    |||||||| |  ||||| | ||| |||||| |||| |||||||||||||||||||| ||||||||||| ||    ||||||||||||||||| || ||      
T  7817032 aagaaggggtttgtagcattcaaacttgacctggaaaaagctttcgacaacgtcaattgggatttccttagttcgtgcctccatgattttggtttccctg 7817131  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    ||||||| ||||||||||||||||||||    
T  7817132 acatcacaatcaagctcatcatgcattg 7817159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 23944828 - 23944900
Alignment:
Q  33 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 105  Q
    |||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |||||    
T  23944828 caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga 23944900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 6641366 - 6641139
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||||||||| || ||||| ||| |||||||||||   |||||||| ||| |||||||||||||| | ||||| |||||    || |||||     
T  6641366 tattggcccctatcaaagtagttttctacctcgtaggggcacttatgataactcaattattttgcaggaaattgtccattttatgaaaagatccaaaaga 6641267  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    || ||||| || ||||||| |||||||||| |||| |||||||| || || || || ||| | ||||| | |   || |||||||| ||||| ||||||     
T  6641266 aaaaagggctatgtagctttcaagcttgacctggaaaaagcttttgataatgttaattggaagttcctcaactcttgtctccatgactttggttttccgg 6641167  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    | ||||| |||||||| |||||| ||||    
T  6641166 atatcacaatcaagcttatcatgtattg 6641139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 23620971 - 23620887
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 104  Q
    |||||||||||| |||||| | |||||||  ||||| ||||||   || |||||||||||||||||||||||| | |||||||||    
T  23620971 tattggtccctaccaaagcggttttctgcaaggtagaggcacttttgacaactctattgttttgcaggaaattgtccatttcatg 23620887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 54477758 - 54477530
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgtttt-gcaggaaattattcatttcatgaagcactctaaaag 118  Q
    |||||| ||||  |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| | |   || |||||    
T  54477758 tattggcccctgccaaagcagttttctgcctggaaggggcacttcagataactctattgtttttgcaggaaataattcatttcataaggagatccaaaag 54477659  T
Q  119 gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg 218  Q
     ||||||||||| |||||||  |||||||| ||| | |||||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| |  || ||     
T  54477658 taagaagggttatgtagcttttaagcttgatttgaaaaaagcttttgacaatgtcaattgggaattccttagcaactgccttcatgatttcgagttccct 54477559  T
Q  219 aacatcaccatcaagctcatcatgcattg 247  Q
     ||||||||||||||||||||||||||||    
T  54477558 gacatcaccatcaagctcatcatgcattg 54477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 3881512 - 3881742
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| || || |||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||| | ||||| | |    
T  3881512 tattggcccttaccaaagcagttttctgcctggtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaagaagtctaagaag 3881611  T
Q  120 aagaag---ggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttc 216  Q
    ||||||   ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| || |     ||||| ||||| ||||  ||||    
T  3881612 aagaagaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttgattttc 3881711  T
Q  217 cgaacatcaccatcaagctcatcatgcattg 247  Q
    ||  |||||||||||| || |||||||||||    
T  3881712 cggccatcaccatcaaacttatcatgcattg 3881742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 33803788 - 33803860
Alignment:
Q  33 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 105  Q
    |||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |||||    
T  33803788 caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga 33803860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 48847971 - 48848055
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 104  Q
    |||||||| |||||||||||| |||||| |||||||||||||| | || ||| | ||||||||||||||||| | ||| ||||||    
T  48847971 tattggtctctatcaaagcagttttctgtctggtaggggcactactgacaacacaattgttttgcaggaaatcactcacttcatg 48848055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 46784826 - 46784742
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 104  Q
    |||||||||||| ||||| || ||||| || |||| ||||||  | || |||||||||||||||||||||||| |||| ||||||    
T  46784826 tattggtccctaccaaagtagttttctaccaggtaagggcacctctgacaactctattgttttgcaggaaattgttcacttcatg 46784742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 11297152 - 11296925
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    ||||||| ||||||||||||| |||||||||||||| || ||| | |||||||| ||||||||||| ||||| || || |||||||     |||||||||    
T  11297152 tattggttcctatcaaagcagttttctgcctggtagtggtacttctgataactcaattgttttgcacgaaatcatccacttcatgataagatctaaaagg 11297053  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |||||||| || ||    | ||||||||||||||| || ||      
T  11297052 aagaagggttatgtcgctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccg 11296953  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    |||||||||| | |||||||||||||||    
T  11296952 acatcaccattatgctcatcatgcattg 11296925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 24894176 - 24893962
Alignment:
Q  33 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 132  Q
    |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| |    
T  24894176 caaagcagctttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg 24894077  T
Q  133 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 232  Q
    | |||| |||||| |||||||||||||||||||| || ||||  ||||||||||| |     ||||| || || ||||| |||||  |||||||||||||    
T  24894076 ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa 24893977  T
Q  233 gctcatcatgcattg 247  Q
    |||||||||||||||    
T  24893976 gctcatcatgcattg 24893962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 35233286 - 35233499
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| |||||||||||||| |||||| |||||||||||||  | || ||||| ||||||||| |||||||| |||| |||||||   | || |||| |    
T  35233286 tattggcccctatcaaagcagttttctgtctggtaggggcacctctgacaactcaattgttttgaaggaaattgttcacttcatgagaaaatccaaaaag 35233385  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    ||||| || || ||||||| ||| |||||  | ||||||||||| ||||| ||||||||||| || || || || ||||| ||||| || || || || |    
T  35233386 aagaaagggtatgtagctttcaaacttgatctagagaaagcttttgacaatgtcaactgggagtttcttagtaattgccttcatgacttcggtttcccta 35233485  T
Q  220 acatcaccatcaag 233  Q
    ||||||||||||||    
T  35233486 acatcaccatcaag 35233499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 32725814 - 32725587
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| || || |||||||| |||||||||  |||||| |||   || ||||| ||||||||| |||||||  |||| || ||||     ||||||| |    
T  32725814 tattggcccttaccaaagcagttttctgcctaataggggaacttatgacaactcaattgttttgtaggaaatagttcactttatgagaagatctaaaaag 32725715  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    |||||||| || ||||||| ||| |||||| ||||||||||||| || || ||||  |||||||| || |     ||||||| ||| ||||||||||||     
T  32725714 aagaagggatatgtagctttcaaacttgacctggagaaagcttttgataatgtcagatgggattttcttaattcttgcctccttgagtttggatttccgg 32725615  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    |||||||||||||||| |||||||||||    
T  32725614 acatcaccatcaagcttatcatgcattg 32725587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 75707 - 75932
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 119  Q
    |||||| ||||||||||| || | | ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||  || ||||||    
T  75707 tattggcccctatcaaagtagttgtttgcctggtaggggcacttcagataactttattgttttgcaggaaataattcacttcatgaagcgttccaaaagg 75806  T
Q  120 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 219  Q
    |||||||  |  ||||||| ||| |||||  ||  |||| |||| ||||||||||||| |||||| || |||| ||||||||||||||| || || |       
T  75807 aagaaggactttgtagctttcaaacttgatatg--gaaatcttttgacaacgtcaacttggattttcttagcatctgcctccatgatttcggcttcctag 75904  T
Q  220 acatcaccatcaagctcatcatgcattg 247  Q
    ||||||| |||||||||||  |||||||    
T  75905 acatcactatcaagctcattttgcattg 75932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 23208206 - 23207989
Alignment:
Q  33 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 132  Q
    |||||||| |||||||| |||||||| ||| | || ||||| ||||||||||||||||||||||| || |||| | | || || |||||||| ||||| |    
T  23208206 caaagcagttttctgccaggtaggggaacttctgacaactcaattgttttgcaggaaattattcactttatgaggaagtcaaagaggaagaaaggttatg 23208107  T
Q  133 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 232  Q
    | |||| |||||| |||||||||||||||||||| || ||||  ||||||||||| |     |||||||| |||||||| |||||  | || ||||||||    
T  23208106 ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgcctccaggattttggttttccagatattaccatcaa 23208007  T
Q  233 gctcatcatgcattgcgt 250  Q
     |||||||||||||||||    
T  23208006 actcatcatgcattgcgt 23207989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 27781979 - 27781759
Alignment:
Q  24 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga 123  Q
    |||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||| |||||||| | || || |||  |   ||||| | |||||    
T  27781979 ggtccctatcaaagcagcttcctgccaggtaggggcacggctgacaactctattgttttgtaggaaattgtacactttatgcggagatctaagaagaaga 27781880  T
Q  124 agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacat 223  Q
    | ||||  ||||||| ||| |||||| | ||||||||||| || || ||||| ||||||||| ||||    ||||| ||||| ||||| || ||  | ||    
T  27781879 aaggttgtgtagctttcaaacttgacctagagaaagcttttgataatgtcaattgggatttcttaagtgcttgccttcatgactttggtttcccagatat 27781780  T
Q  224 caccatcaagctcatcatgca 244  Q
     ||||| ||||||||||||||    
T  27781779 taccataaagctcatcatgca 27781759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 16770314 - 16770233
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttc 101  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||| | || ||||| |||||||||||||||||| ||||||||    
T  16770314 tattggtccttatcagagcagttttctgcctggtaggggcactactgacaactcaattgttttgcaggaaatttttcatttc 16770233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 1579512 - 1579428
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 104  Q
    ||||||||||||||||||||| ||||||||| |||||||| || | || ||||| ||||||||| ||||||| | ||| ||||||    
T  1579512 tattggtccctatcaaagcagttttctgcctagtaggggcgctactgacaactcaattgttttgaaggaaataactcacttcatg 1579428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 8764 - 8841
Alignment:
Q  20 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattca 97  Q
    ||||||||| || |||||||| || |||||||||||||||||  | || ||  | |||||||||||||||||||||||    
T  8764 tattggtccttaccaaagcagtttcctgcctggtaggggcaccactgacaatgccattgttttgcaggaaattattca 8841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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