View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_29 (Length: 245)
Name: NF16105_low_29
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 12239754 - 12239532
Alignment:
| Q |
16 |
aacaattgtctgatcaagttttatatcatatagacatctctataaaattttatataaatagaaaattatttatgcatctcataaaatatcatatcaaatt |
115 |
Q |
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| T |
12239754 |
aacaattgtctgatcaagttttatatcatatagacatctctataaaattttatataaatagaaaattatttatgcatctcataaaatatcatatcaaata |
12239655 |
T |
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| Q |
116 |
atttcatatttacgtcaaatcttagaaatgatctatatgaatatatgagtagttaagattcaagttaatttttacgtattaagaggtctaaaattcgggt |
215 |
Q |
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| T |
12239654 |
atttcatatttacgtaaaatcttagaaatgatctatatgaatatatgagtagttaagattcaaattaatttttacatattaagaggtctaaaattcggat |
12239555 |
T |
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| Q |
216 |
tgtcttgaacgattcatcctttg |
238 |
Q |
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| T |
12239554 |
tgtcttcaacgattcatcctttg |
12239532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 12226962 - 12226911
Alignment:
| Q |
35 |
tttatatcatatagacatctctataaaattttatataaatagaaaattattta |
87 |
Q |
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| T |
12226962 |
tttatatcatataaacatctctgtaaaa-tttatataaatacaaaattattta |
12226911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 12236075 - 12236043
Alignment:
| Q |
206 |
aaattcgggttgtcttgaacgattcatcctttg |
238 |
Q |
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| T |
12236075 |
aaatttgggttgtcttgaacgattcatcctttg |
12236043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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