View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_30 (Length: 244)
Name: NF16105_low_30
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 10860673 - 10860832
Alignment:
| Q |
44 |
gcttaaactcaaaaccaaaaccatgttgttatcatcagaatcaacttcttgtgcaatagaatcagtgcatacactacgagaagcattcttgtatctatac |
143 |
Q |
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| T |
10860673 |
gcttaaactcaaaaccaaaaccatgttgttatcatcagaatcaacttcttgtgcaatagaatcagtgcatacactacgagaagcatccttgtatctatac |
10860772 |
T |
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| Q |
144 |
cttggaggaaaaccatgcttgaagtagcatgtgtcacgagcatgattagtgccattacaa |
203 |
Q |
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| T |
10860773 |
cttggaggaaaaccatgcttgaagtagcatgtatcaagagcatgattagtgtcattacaa |
10860832 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 10905742 - 10905850
Alignment:
| Q |
71 |
gttatcatcagaatcaacttcttgtgcaatagaatcagtgcatacactacgagaagcattcttgtatctataccttggaggaaaaccatgcttgaagtag |
170 |
Q |
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| T |
10905742 |
gttatcattagaatcaactttttatgcaacagaaacagtgcattccttatgagcagacttcttgaatataaaccttggaggaaaaccatgcttgaagtag |
10905841 |
T |
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| Q |
171 |
catgtgtca |
179 |
Q |
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| T |
10905842 |
catgtgtca |
10905850 |
T |
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