View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16105_low_32 (Length: 238)
Name: NF16105_low_32
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 12268669 - 12268889
Alignment:
| Q |
11 |
cccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaa-aataaaggtctaatgcaaatatctttttggg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12268669 |
cccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaaaaataaaggtctaatgcaaatatctttttggg |
12268768 |
T |
|
| Q |
110 |
tgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12268769 |
tgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaa |
12268868 |
T |
|
| Q |
210 |
aacaatgcgttgtgatgatgt |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12268869 |
aacaatgcgttgtgatgatgt |
12268889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12270203 - 12270276
Alignment:
| Q |
1 |
tacccatccccccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctat |
74 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||| |||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
12270203 |
taccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaagaatcgttggctat |
12270276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University