View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16105_low_33 (Length: 236)

Name: NF16105_low_33
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16105_low_33
NF16105_low_33
[»] chr7 (33 HSPs)
chr7 (1-43)||(10091185-10091227)
chr7 (1-42)||(31197589-31197630)
chr7 (1-43)||(18044104-18044146)
chr7 (1-42)||(2344297-2344338)
chr7 (1-42)||(2751269-2751310)
chr7 (1-42)||(7176024-7176065)
chr7 (1-42)||(7275275-7275316)
chr7 (1-42)||(21217995-21218036)
chr7 (1-42)||(23854394-23854435)
chr7 (1-42)||(40543072-40543113)
chr7 (1-41)||(2103054-2103094)
chr7 (1-39)||(8435857-8435895)
chr7 (1-43)||(27009356-27009398)
chr7 (1-43)||(27312149-27312191)
chr7 (1-42)||(11997847-11997888)
chr7 (1-38)||(13332585-13332622)
chr7 (1-42)||(17212051-17212092)
chr7 (1-42)||(21370595-21370636)
chr7 (1-38)||(22119890-22119927)
chr7 (1-42)||(25333417-25333458)
chr7 (1-38)||(28003838-28003875)
chr7 (1-42)||(31713057-31713098)
chr7 (1-41)||(7799994-7800034)
chr7 (3-42)||(22638290-22638329)
chr7 (8-38)||(3951160-3951190)
chr7 (1-39)||(12211697-12211735)
chr7 (1-39)||(28089817-28089855)
chr7 (1-42)||(32849589-32849630)
chr7 (1-42)||(40332097-40332138)
chr7 (1-42)||(42913675-42913716)
chr7 (10-38)||(3950960-3950988)
chr7 (1-41)||(19421230-19421270)
chr7 (1-41)||(21574265-21574305)
[»] chr3 (26 HSPs)
chr3 (1-43)||(40940818-40940860)
chr3 (1-42)||(25289876-25289917)
chr3 (1-45)||(30807315-30807359)
chr3 (1-43)||(35492904-35492946)
chr3 (1-43)||(46576341-46576383)
chr3 (1-42)||(9842915-9842956)
chr3 (1-42)||(30257618-30257659)
chr3 (1-42)||(34492737-34492778)
chr3 (1-42)||(45529916-45529957)
chr3 (3-42)||(8456314-8456353)
chr3 (1-40)||(53424338-53424377)
chr3 (1-43)||(21362936-21362978)
chr3 (1-43)||(45272578-45272620)
chr3 (1-42)||(4252558-4252599)
chr3 (1-42)||(31538000-31538041)
chr3 (1-42)||(40133611-40133652)
chr3 (1-42)||(48977382-48977423)
chr3 (2-43)||(49258425-49258466)
chr3 (1-42)||(50582986-50583027)
chr3 (1-37)||(25379760-25379796)
chr3 (1-41)||(52455811-52455851)
chr3 (1-43)||(4462626-4462668)
chr3 (1-42)||(7485687-7485728)
chr3 (1-42)||(18177049-18177090)
chr3 (3-43)||(24703697-24703737)
chr3 (3-39)||(25344221-25344257)
[»] chr2 (17 HSPs)
chr2 (1-43)||(11941372-11941414)
chr2 (1-42)||(44946215-44946256)
chr2 (1-42)||(18976587-18976628)
chr2 (1-42)||(33827735-33827776)
chr2 (1-41)||(8192513-8192553)
chr2 (1-45)||(24195995-24196039)
chr2 (1-42)||(25293160-25293201)
chr2 (1-38)||(44976316-44976353)
chr2 (3-43)||(20297556-20297596)
chr2 (2-45)||(4567600-4567643)
chr2 (3-42)||(27269514-27269553)
chr2 (1-43)||(30466992-30467034)
chr2 (1-43)||(31536201-31536243)
chr2 (4-42)||(36390731-36390769)
chr2 (1-42)||(15037953-15037994)
chr2 (1-42)||(32845085-32845126)
chr2 (1-41)||(40997512-40997552)
[»] chr1 (27 HSPs)
chr1 (1-43)||(27455028-27455070)
chr1 (1-43)||(8077640-8077682)
chr1 (1-43)||(24674386-24674428)
chr1 (1-42)||(4621399-4621440)
chr1 (1-42)||(7197408-7197449)
chr1 (1-42)||(34778336-34778377)
chr1 (1-37)||(1095157-1095193)
chr1 (3-42)||(32729539-32729578)
chr1 (1-39)||(52135127-52135165)
chr1 (1-42)||(14258589-14258630)
chr1 (1-42)||(15059564-15059605)
chr1 (1-42)||(20487352-20487393)
chr1 (1-42)||(29057499-29057540)
chr1 (1-42)||(46607804-46607845)
chr1 (1-42)||(47091684-47091725)
chr1 (1-41)||(1486415-1486455)
chr1 (3-43)||(2537697-2537737)
chr1 (3-43)||(23734109-23734149)
chr1 (3-43)||(23741301-23741341)
chr1 (3-42)||(168195-168234)
chr1 (1-43)||(1138572-1138614)
chr1 (1-43)||(7766889-7766931)
chr1 (1-43)||(24122016-24122058)
chr1 (1-38)||(1378743-1378780)
chr1 (2-42)||(23232428-23232468)
chr1 (1-41)||(24216973-24217013)
chr1 (1-37)||(46113564-46113600)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-44)||(8569-8612)
[»] chr6 (21 HSPs)
chr6 (1-44)||(22576059-22576102)
chr6 (1-39)||(9843935-9843973)
chr6 (1-43)||(11007158-11007200)
chr6 (1-43)||(34147339-34147381)
chr6 (1-43)||(34159955-34159997)
chr6 (2-43)||(3222797-3222838)
chr6 (1-42)||(9238969-9239010)
chr6 (1-42)||(12591631-12591672)
chr6 (1-42)||(15360260-15360301)
chr6 (1-44)||(9208244-9208287)
chr6 (1-44)||(33499466-33499509)
chr6 (1-43)||(21148672-21148714)
chr6 (2-40)||(21982483-21982521)
chr6 (1-42)||(13753234-13753275)
chr6 (1-42)||(33718620-33718661)
chr6 (1-40)||(8479308-8479347)
chr6 (1-36)||(11448871-11448906)
chr6 (1-43)||(28672060-28672102)
chr6 (1-42)||(5360233-5360274)
chr6 (1-42)||(17081216-17081257)
chr6 (1-41)||(17420860-17420900)
[»] chr5 (30 HSPs)
chr5 (1-44)||(32059602-32059645)
chr5 (1-43)||(13108611-13108653)
chr5 (1-42)||(22392695-22392736)
chr5 (1-42)||(23270684-23270725)
chr5 (1-42)||(25586926-25586967)
chr5 (3-39)||(22253309-22253345)
chr5 (1-44)||(15641267-15641310)
chr5 (1-39)||(4603774-4603812)
chr5 (1-39)||(8484823-8484861)
chr5 (1-43)||(11926664-11926706)
chr5 (1-43)||(13038616-13038658)
chr5 (1-39)||(38631123-38631161)
chr5 (1-42)||(12317312-12317353)
chr5 (1-42)||(15931053-15931094)
chr5 (1-42)||(31288108-31288149)
chr5 (1-42)||(34049816-34049857)
chr5 (1-42)||(37397707-37397748)
chr5 (1-41)||(36954813-36954853)
chr5 (3-42)||(5067295-5067334)
chr5 (1-40)||(19145573-19145612)
chr5 (1-43)||(1827692-1827734)
chr5 (1-39)||(25750773-25750811)
chr5 (1-43)||(27498893-27498935)
chr5 (1-43)||(33025473-33025515)
chr5 (1-43)||(33709663-33709704)
chr5 (1-42)||(3715071-3715112)
chr5 (1-42)||(7085788-7085829)
chr5 (1-42)||(30485822-30485863)
chr5 (1-42)||(34310136-34310177)
chr5 (1-38)||(42006791-42006828)
[»] chr8 (27 HSPs)
chr8 (1-43)||(4718642-4718684)
chr8 (1-42)||(2618184-2618225)
chr8 (1-42)||(3734785-3734826)
chr8 (1-42)||(18532105-18532146)
chr8 (3-44)||(20305904-20305945)
chr8 (3-44)||(21092537-21092578)
chr8 (1-42)||(34237817-34237858)
chr8 (1-41)||(19471608-19471648)
chr8 (1-41)||(19542532-19542572)
chr8 (1-41)||(19590124-19590164)
chr8 (1-41)||(42328004-42328044)
chr8 (3-42)||(32879277-32879316)
chr8 (1-44)||(42643280-42643323)
chr8 (1-39)||(15259568-15259606)
chr8 (1-43)||(28193471-28193513)
chr8 (1-39)||(34639368-34639406)
chr8 (1-42)||(39349254-39349295)
chr8 (1-44)||(21667546-21667589)
chr8 (1-39)||(27746497-27746535)
chr8 (1-39)||(34694738-34694776)
chr8 (1-42)||(775943-775984)
chr8 (1-42)||(781597-781638)
chr8 (1-42)||(7558105-7558146)
chr8 (1-42)||(24018380-24018421)
chr8 (1-38)||(25248366-25248403)
chr8 (1-42)||(26169010-26169051)
chr8 (3-40)||(28964033-28964070)
[»] scaffold0576 (1 HSPs)
scaffold0576 (1-42)||(5244-5285)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-42)||(66756-66797)
[»] chr4 (24 HSPs)
chr4 (1-42)||(5609364-5609405)
chr4 (1-42)||(25852208-25852249)
chr4 (1-42)||(32986191-32986232)
chr4 (1-42)||(40059014-40059055)
chr4 (1-42)||(46714386-46714427)
chr4 (1-42)||(54127504-54127545)
chr4 (3-38)||(34835527-34835562)
chr4 (1-43)||(19660694-19660736)
chr4 (1-39)||(20566346-20566384)
chr4 (1-43)||(33696441-33696483)
chr4 (1-42)||(1985830-1985871)
chr4 (1-42)||(22625232-22625273)
chr4 (1-42)||(35674903-35674944)
chr4 (1-42)||(52983613-52983654)
chr4 (2-42)||(13771646-13771686)
chr4 (1-41)||(13873457-13873497)
chr4 (1-37)||(32942369-32942405)
chr4 (3-37)||(9646380-9646414)
chr4 (1-43)||(41621758-41621800)
chr4 (1-42)||(27528957-27528998)
chr4 (1-42)||(34722164-34722205)
chr4 (1-42)||(34844920-34844961)
chr4 (1-38)||(43719227-43719264)
chr4 (1-38)||(45787865-45787902)
[»] scaffold0026 (1 HSPs)
scaffold0026 (2-42)||(97529-97569)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-43)||(41806-41848)
[»] scaffold0623 (1 HSPs)
scaffold0623 (1-38)||(1218-1255)
[»] scaffold0460 (1 HSPs)
scaffold0460 (1-42)||(8341-8382)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-38)||(10855-10892)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-38)||(9461-9498)
scaffold0366 (1-38)||(12162-12199)
[»] scaffold0328 (1 HSPs)
scaffold0328 (1-42)||(14985-15026)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-42)||(40319-40360)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-42)||(27770-27811)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-41)||(53033-53073)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-42)||(7471-7512)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-42)||(26705-26746)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10091227 - 10091185
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10091227 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 10091185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31197630 - 31197589
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31197630 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 31197589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18044146 - 18044104
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  18044146 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 18044104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2344338 - 2344297
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  2344338 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 2344297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2751310 - 2751269
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  2751310 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 2751269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7176024 - 7176065
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  7176024 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 7176065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7275316 - 7275275
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  7275316 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 7275275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21217995 - 21218036
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  21217995 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 21218036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23854435 - 23854394
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  23854435 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 23854394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40543072 - 40543113
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  40543072 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 40543113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2103094 - 2103054
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  2103094 ccaagatcccaagccaaccactaggccaaccccaaatgggt 2103054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8435857 - 8435895
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  8435857 ccaagatcccaagtcaaccactagaccaaccccaaatgg 8435895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27009398 - 27009356
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  27009398 ccaagatccgaagccaaccactaggccaaccccaaatgggtta 27009356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27312191 - 27312149
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  27312191 ccaagatcccaagccaaccactaggccaaccccaaataggtta 27312149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11997888 - 11997847
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  11997888 ccaagatcccaagccaaccactagcccaaccacaaatgggtt 11997847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13332585 - 13332622
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  13332585 ccaagatcccaagccaaccactaggccaaccccaaatg 13332622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17212092 - 17212051
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  17212092 ccaagatcccaagccaaccactaagccaaccccaaatgggtt 17212051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21370636 - 21370595
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  21370636 ccaagatcccaaaccaaccactaggccaaccccaaatgggtt 21370595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22119927 - 22119890
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22119927 ccaagatcccaagccaaccactaggccaaccccaaatg 22119890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25333458 - 25333417
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  25333458 ccaagatcccaagccaaccactaagccaaccccaaatgggtt 25333417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28003875 - 28003838
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28003875 ccaagatcccaagccaaccactagatcaaccccaaatg 28003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31713057 - 31713098
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  31713057 ccaagatcccaaaccaaccactaggccaaccccaaatgggtt 31713098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7799994 - 7800034
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  7799994 ccaagatcccaagccaaccactaggtcaaccccaaatgggt 7800034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 22638329 - 22638290
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  22638329 aagatctcaagtcaaccactagaccaaccccaaatgggtt 22638290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 3951160 - 3951190
Alignment:
Q  8 cccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||||||||||    
T  3951160 cccaagccaaccactagaccaaccccaaatg 3951190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12211697 - 12211735
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  12211697 ccaagatcctaagccaaccactaggccaaccccaaatgg 12211735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28089855 - 28089817
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  28089855 ccaagatctcaagccaaccactaggccaaccccaaatgg 28089817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32849630 - 32849589
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||| |||||||||| | |||||||||||||||    
T  32849630 ccaagatcccaagtcaaccactaggctaaccccaaatgggtt 32849589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40332138 - 40332097
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||  ||||||||||||||||||||| |||||||||||    
T  40332138 ccaagatttcaagccaaccactagaccaactccaaatgggtt 40332097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42913675 - 42913716
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  42913675 ccaagatcccaagccaaccactaggccaaccgaaaatgggtt 42913716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 3950960 - 3950988
Alignment:
Q  10 caagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||||||||    
T  3950960 caagccaaccactagaccaaccccaaatg 3950988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19421270 - 19421230
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||   |||||||||||||||    
T  19421270 ccaagatcccaagccaaccactaagtcaaccccaaatgggt 19421230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21574265 - 21574305
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  21574265 ccaaaatcccaaaccaaccactaggccaaccccaaatgggt 21574305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40940860 - 40940818
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40940860 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 40940818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25289876 - 25289917
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25289876 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 25289917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30807315 - 30807359
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttatc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  30807315 ccaagatcccaagccaaccactaggccaaccccaaatgggttatc 30807359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35492946 - 35492904
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  35492946 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 35492904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 46576383 - 46576341
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  46576383 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 46576341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9842956 - 9842915
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  9842956 ccaagatcccaaaccaaccactagaccaaccccaaatgggtt 9842915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30257659 - 30257618
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  30257659 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 30257618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34492737 - 34492778
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  34492737 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 34492778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45529916 - 45529957
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  45529916 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 45529957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 8456314 - 8456353
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  8456314 aagatcccaagccaaccactaggccaaccccaaatgggtt 8456353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 53424338 - 53424377
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatggg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  53424338 ccaagatcccaagccaaccactaggccaaccccaaatggg 53424377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21362978 - 21362936
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  21362978 ccaagatcccaagtcaaccactaggccaaccccaaatgggtta 21362936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45272578 - 45272620
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  45272578 ccaagatcccaagccaacgactaggccaaccccaaatgggtta 45272620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4252558 - 4252599
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  4252558 ccaagatctcaagccaaccactaggccaaccccaaatgggtt 4252599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31538000 - 31538041
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  31538000 ccaagatcctaagccaaccactaggccaaccccaaatgggtt 31538041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40133611 - 40133652
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  40133611 ccaaaatcccaagccaaccactaggccaaccccaaatgggtt 40133652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48977423 - 48977382
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  48977423 ccaagatcccaagtcaaccactaggccaaccccaaatgggtt 48977382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 49258425 - 49258466
Alignment:
Q  2 caagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  49258425 caagatcccaagccaaccactaggcaaaccccaaatgggtta 49258466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50583027 - 50582986
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  50583027 ccaagatcccaaaccaaccactaggccaaccccaaatgggtt 50582986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25379796 - 25379760
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaat 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  25379796 ccaagatcccaagccaaccactaggccaaccccaaat 25379760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52455811 - 52455851
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  52455811 ccaagatccctagccaaccactaggccaaccccaaatgggt 52455851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4462668 - 4462626
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||    
T  4462668 ccaagatctcaagccaaccactaggccaaccccaaatgagtta 4462626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7485687 - 7485728
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||| |||||||||  |||||||||||||||||    
T  7485687 ccaagatcccaagtcaaccactatgccaaccccaaatgggtt 7485728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18177049 - 18177090
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||| |||| |||||||||| |||||||||||||||||    
T  18177049 ccaagatctcaagtcaaccactaggccaaccccaaatgggtt 18177090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 24703737 - 24703697
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  24703737 aagatcccaagtcaaccactagaccaacctcaaatgagtta 24703697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 25344221 - 25344257
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  25344221 aagatcccaagtcaaccactaggccaaccccaaatgg 25344257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11941372 - 11941414
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11941372 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 11941414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44946215 - 44946256
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44946215 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 44946256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18976587 - 18976628
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  18976587 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 18976628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33827735 - 33827776
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  33827735 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 33827776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8192513 - 8192553
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  8192513 ccaagatcccaagccaaccactaggccaaccccaaatgggt 8192553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24196039 - 24195995
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttatc 45  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||    
T  24196039 ccaaaatcccaagccaaccactaggccaaccccaaatgggttatc 24195995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25293201 - 25293160
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  25293201 ccaagatcccaagtcaaccactagaccaacctcaaatgggtt 25293160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44976316 - 44976353
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  44976316 ccaagatcccaagccaaccactaggccaaccccaaatg 44976353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 20297596 - 20297556
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  20297596 aagatcccaagccaaccactgggccaaccccaaatgggtta 20297556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 4567600 - 4567643
Alignment:
Q  2 caagatcccaagccaaccactagaccaaccccaaatgggttatc 45  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||    
T  4567600 caagatcccaagccaactactaggccaaccccaaatggattatc 4567643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 27269514 - 27269553
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  27269514 aagatcccaagccaaccactatgccaaccccaaatgggtt 27269553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30466992 - 30467034
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||    
T  30466992 ccaatatcccaaaccaaccactaggccaaccccaaatgggtta 30467034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31536243 - 31536201
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||||||||||| |||||| || |||||||||||||    
T  31536243 ccaagatcccaagccaaccgctagactaatcccaaatgggtta 31536201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 36390731 - 36390769
Alignment:
Q  4 agatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  36390731 agatcccaaaccaaccactaggccaaccccaaatgggtt 36390769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15037994 - 15037953
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||| || |||||||||| |||||||||||||||||    
T  15037994 ccaagatcccgagtcaaccactaggccaaccccaaatgggtt 15037953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32845126 - 32845085
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  32845126 ccaagatcccaagctaactactaggccaaccccaaatgggtt 32845085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40997512 - 40997552
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    ||||||||||||| ||||||||||||| ||| |||||||||    
T  40997512 ccaagatcccaagtcaaccactagacccacctcaaatgggt 40997552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27455028 - 27455070
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27455028 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 27455070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8077682 - 8077640
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  8077682 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 8077640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24674428 - 24674386
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  24674428 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 24674386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4621399 - 4621440
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  4621399 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 4621440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7197408 - 7197449
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  7197408 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 7197449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34778377 - 34778336
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  34778377 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 34778336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1095157 - 1095193
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  1095157 ccaagatcccaagccaaccactagaccaaccccaaat 1095193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 32729578 - 32729539
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  32729578 aagatcccaagccaaccactaggccaaccccaaatgggtt 32729539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 52135165 - 52135127
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  52135165 ccaagatcccaagtcaaccactagaccaaccccaaatgg 52135127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14258589 - 14258630
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  14258589 ccaagatcccaagccaaccactaggccaagcccaaatgggtt 14258630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15059564 - 15059605
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  15059564 ccaagattccaagccaaccactaggccaaccccaaatgggtt 15059605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20487352 - 20487393
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  20487352 ccaagatcccgagccaaccactaaaccaaccccaaatgggtt 20487393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29057499 - 29057540
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  29057499 ccaagatcccaaaccaaccactaggccaaccccaaatgggtt 29057540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46607845 - 46607804
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  46607845 ccaagatcccaagtcaaccactaggccaaccccaaatgggtt 46607804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47091725 - 47091684
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  47091725 ccaagatctcaagccaaccactaggccaaccccaaatgggtt 47091684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1486455 - 1486415
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  1486455 ccaagatcccaagccaaccactaggtcaaccccaaatgggt 1486415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 2537737 - 2537697
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  2537737 aagatcccaatccaaccactaggccaaccccaaatgggtta 2537697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 23734149 - 23734109
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  23734149 aagatcccaagccaactactaaaccaaccccaaatgggtta 23734109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 23741341 - 23741301
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  23741341 aagatcccaagccaactactaaaccaaccccaaatgggtta 23741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 168234 - 168195
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  168234 aagatcccaagccaaccactaggccaactccaaatgggtt 168195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1138614 - 1138572
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  1138614 ccaagatctcaagccaaccactaggtcaaccccaaatgggtta 1138572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7766889 - 7766931
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||| ||||||||| |||||||| |||||||||    
T  7766889 ccaagatcccaagctaaccactaggccaaccccgaatgggtta 7766931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24122058 - 24122016
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||  ||||||||||||| ||||    
T  24122058 ccaagatcccaagccaaccactaagccaaccccaaatgagtta 24122016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1378780 - 1378743
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  1378780 ccaagattccaagtcaaccactagaccaaccccaaatg 1378743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 23232428 - 23232468
Alignment:
Q  2 caagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  23232428 caagatcccaagtcaaccactaggccaatcccaaatgggtt 23232468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24217013 - 24216973
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    ||||||||||||| ||||||||||  |||||||||||||||    
T  24217013 ccaagatcccaagtcaaccactaggtcaaccccaaatgggt 24216973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46113564 - 46113600
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaat 37  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  46113564 ccaagatcccaaaccaaccactaggccaaccccaaat 46113600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8569 - 8612
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  8569 ccaagatcccaagccaaccactaggccaaccccaaatgggttat 8612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22576102 - 22576059
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  22576102 ccaagatcccaagccaaccactaggccaaccccaaatgggttat 22576059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9843973 - 9843935
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9843973 ccaagatcccaagccaaccactagaccaaccccaaatgg 9843935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11007200 - 11007158
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  11007200 ccaagatcccaagccaaccactagatcaaccccaaatgggtta 11007158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34147381 - 34147339
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  34147381 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 34147339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34159997 - 34159955
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  34159997 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 34159955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 3222797 - 3222838
Alignment:
Q  2 caagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  3222797 caagatcccaagccaaccactaggccaaccccaaatgggtta 3222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9239010 - 9238969
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  9239010 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 9238969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12591672 - 12591631
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  12591672 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 12591631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15360260 - 15360301
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  15360260 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 15360301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9208287 - 9208244
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  9208287 ccaagatcccaatccaaccactagaacaaccccaaatgggttat 9208244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33499509 - 33499466
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  33499509 ccaagatcccaagccaaccaccaggccaaccccaaatgggttat 33499466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21148672 - 21148714
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  21148672 ccaagatcccaagccaaccactaggccaactccaaatgggtta 21148714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 21982483 - 21982521
Alignment:
Q  2 caagatcccaagccaaccactagaccaaccccaaatggg 40  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  21982483 caagatcccaagccaaccactaggccaaccccaaatggg 21982521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13753275 - 13753234
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  13753275 ccaagatccaaagccaaccactaggccaaccccaaatgggtt 13753234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33718620 - 33718661
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  33718620 ccaagatcccaaaccaaccactagaccaaccctaaatgggtt 33718661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8479347 - 8479308
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatggg 40  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  8479347 ccaagatcccaagtcaaccactaggccaaccccaaatggg 8479308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 11448906 - 11448871
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaa 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  11448906 ccaagatcccaagccaaccactaggccaaccccaaa 11448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28672102 - 28672060
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||| |||| |||||||||| ||||||||||||||||||    
T  28672102 ccaagatctcaagtcaaccactaggccaaccccaaatgggtta 28672060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5360233 - 5360274
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  5360233 ccaagatcccaagccaaccaccaggccaactccaaatgggtt 5360274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17081216 - 17081257
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||| |||||||||||||||| |||| ||||||||||    
T  17081216 ccaagatcctaagccaaccactagactaacctcaaatgggtt 17081257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17420900 - 17420860
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    ||||||||||||| |||||| |||||||||||| |||||||    
T  17420900 ccaagatcccaagtcaaccattagaccaaccccgaatgggt 17420860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32059602 - 32059645
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  32059602 ccaagatcccaagccaaccactaggccaaccccaaatgggttat 32059645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13108611 - 13108653
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  13108611 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 13108653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22392736 - 22392695
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  22392736 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 22392695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23270684 - 23270725
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  23270684 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 23270725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25586967 - 25586926
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  25586967 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 25586926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 22253309 - 22253345
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  22253309 aagatcccaagccaaccactagaccaaccccaaatgg 22253345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15641267 - 15641310
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  15641267 ccaagatcccaagccaaccactaggctaaccccaaatgggttat 15641310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4603812 - 4603774
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  4603812 ccaagatcccaagccaaccactaggccaaccccaaatgg 4603774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8484823 - 8484861
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  8484823 ccaagatcccaagccaaccactaggccaaccccaaatgg 8484861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11926664 - 11926706
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  11926664 ccaagatcccaaaccaaccactaggccaaccccaaatgggtta 11926706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13038616 - 13038658
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  13038616 ccaagatcccaaaccaaccactaggccaaccccaaatgggtta 13038658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38631123 - 38631161
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  38631123 ccaagatcccaagccaaccactaggccaaccccaaatgg 38631161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12317312 - 12317353
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  12317312 ccaagattccaagccaaccactaggccaaccccaaatgggtt 12317353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15931094 - 15931053
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  15931094 ccaagatcccaagctaaccactaggccaaccccaaatgggtt 15931053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31288108 - 31288149
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  31288108 ccaagatcccaagccaaccactaggccaacccaaaatgggtt 31288149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34049857 - 34049816
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  34049857 ccaagatcccaagccaactactagcccaaccccaaatgggtt 34049816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37397748 - 37397707
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  37397748 ccaagatcacaagccaaccactagaccaaccccaaataggtt 37397707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36954853 - 36954813
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  36954853 ccaagatcccaaggcaaccactaggccaaccccaaatgggt 36954813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 5067334 - 5067295
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  5067334 aagatcccaagtcaaccactagaccaactccaaatgggtt 5067295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19145573 - 19145612
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatggg 40  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  19145573 ccaagatcccaagtcaaccactaggccaaccccaaatggg 19145612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1827692 - 1827734
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  1827692 ccaagatctcaagccaaccactaggtcaaccccaaatgggtta 1827734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25750773 - 25750811
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  25750773 ccaagatcccaagtcaaccactaggccaaccccaaatgg 25750811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27498893 - 27498935
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||| ||||||||||||||||  |||||||||||||||||    
T  27498893 ccaagattccaagccaaccactaggtcaaccccaaatgggtta 27498935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33025515 - 33025473
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||||||||||| | || ||||||||||||||||||    
T  33025515 ccaagatcccaagccaaccgcgaggccaaccccaaatgggtta 33025473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33709663 - 33709704
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  33709663 ccaagatcccaagccaaccactaggccaa-cccaaatgggtta 33709704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3715071 - 3715112
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||| ||||||||||| |||||||||||| ||||    
T  3715071 ccaagatcccaaaccaaccactaggccaaccccaaattggtt 3715112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7085788 - 7085829
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  7085788 ccaagatcccaagccaaccactaagccagccccaaatgggtt 7085829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30485863 - 30485822
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  30485863 ccaagatcccaagccaaccgctgggccaaccccaaatgggtt 30485822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34310177 - 34310136
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||| ||||||| |||||||| |||||||||||||||||    
T  34310177 ccaagattccaagccgaccactaggccaaccccaaatgggtt 34310136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42006828 - 42006791
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  42006828 ccaagatctcaagccaaccactagcccaaccccaaatg 42006791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4718684 - 4718642
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  4718684 ccaagatcccaagccaaccactaggccaaccccaaatgggtta 4718642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2618225 - 2618184
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  2618225 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 2618184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3734785 - 3734826
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  3734785 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 3734826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18532146 - 18532105
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  18532146 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 18532105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 20305945 - 20305904
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  20305945 aagatcccaagccaaccactaggccaaccccaaatgggttat 20305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 21092578 - 21092537
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  21092578 aagatcccaagccaaccactaggccaaccccaaatgggttat 21092537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34237817 - 34237858
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  34237817 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 34237858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19471648 - 19471608
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  19471648 ccaagatcccaagccaaccactaggccaaccccaaatgggt 19471608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19542572 - 19542532
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  19542572 ccaagatcccaagccaaccactaggccaaccccaaatgggt 19542532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19590124 - 19590164
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  19590124 ccaagatcccaagccaaccactaggccaaccccaaatgggt 19590164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42328044 - 42328004
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  42328044 ccaagatcccaagccaaccactaggccaaccccaaatgggt 42328004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 32879316 - 32879277
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  32879316 aagatcccaagtcaaccactagaccaaccccaaatgggtt 32879277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42643280 - 42643323
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  42643280 ccaagatcccaagtcaaccactaggccaaccccaaatgggttat 42643323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15259568 - 15259606
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  15259568 ccaagatcccaaaccaaccactagaccaaccccaaatgg 15259606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28193513 - 28193471
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  28193513 ccaagatcccaagccaaccactaggccaaccccaaataggtta 28193471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34639368 - 34639406
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34639368 ccaagatcccaagccaaccactagactaaccccaaatgg 34639406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39349295 - 39349254
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  39349295 ccaagatcccaagccaaccactgggccaaccccaaatgggtt 39349254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21667589 - 21667546
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggttat 44  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||    
T  21667589 ccaagattccaagccaaccactagaccaacctcaaatggattat 21667546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27746497 - 27746535
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  27746497 ccaagatcccaaaccaaccactaggccaaccccaaatgg 27746535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34694738 - 34694776
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  34694738 ccaagatcacaagtcaaccactagaccaaccccaaatgg 34694776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 775943 - 775984
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  775943 ccaagatcccaagccaaccattggaccaaccccaaattggtt 775984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 781597 - 781638
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  781597 ccaagatcccaagccaaccattggaccaaccccaaattggtt 781638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7558105 - 7558146
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  7558105 ccaagatcccaagctaactactaggccaaccccaaatgggtt 7558146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24018421 - 24018380
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||    
T  24018421 ccaagatcccaagtcaaccactagatcaaccccaaataggtt 24018380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25248403 - 25248366
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  25248403 ccaagatcccaagccaaccactagatcaacctcaaatg 25248366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26169010 - 26169051
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||| ||||||||| ||||||| |||||||||    
T  26169010 ccaagatcccaagcaaaccactaggccaaccctaaatgggtt 26169051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 28964070 - 28964033
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatggg 40  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  28964070 aagatctcaaaccaaccactagaccaaccccaaatggg 28964033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5244 - 5285
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  5244 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 66797 - 66756
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  66797 ccaagatcccaagccaaccactagaccaatcccaaatgggtt 66756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5609364 - 5609405
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  5609364 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 5609405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25852249 - 25852208
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  25852249 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 25852208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32986232 - 32986191
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  32986232 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 32986191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40059014 - 40059055
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  40059014 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 40059055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46714427 - 46714386
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  46714427 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 46714386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54127504 - 54127545
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  54127504 ccaagatcccaagccaaccactaggccaaccccaaatgggtt 54127545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 34835562 - 34835527
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaatg 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  34835562 aagatcccaagccaaccactagaccaaccccaaatg 34835527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19660694 - 19660736
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  19660694 ccaagatcccaagccaaccactaggccaactccaaatgggtta 19660736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 20566384 - 20566346
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  20566384 ccaagatcccaagccaaccactaggccaaccccaaatgg 20566346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33696441 - 33696483
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33696441 ccaagatcccaagccaaccactaggccaaccctaaatgggtta 33696483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1985871 - 1985830
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  1985871 ccaagatcccaagccaaccactaggccaatcccaaatgggtt 1985830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22625232 - 22625273
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  22625232 ccaagatcccaagccaaccactaggccaacctcaaatgggtt 22625273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35674903 - 35674944
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  35674903 ccaagatcccaagccaaccacttggccaaccccaaatgggtt 35674944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52983654 - 52983613
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  52983654 ccaagatctcaagccaaccactaggccaaccccaaatgggtt 52983613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 13771646 - 13771686
Alignment:
Q  2 caagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  13771646 caagatcccaagccaaccatcagaccaaccccaaatgggtt 13771686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13873457 - 13873497
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  13873457 ccaagatcccaagcaaaccactaggccaaccccaaatgggt 13873497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32942405 - 32942369
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaat 37  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32942405 ccaagatctcaagccaaccactagaccaaccccaaat 32942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 9646380 - 9646414
Alignment:
Q  3 aagatcccaagccaaccactagaccaaccccaaat 37  Q
    |||||||||| ||||||||||||||||||||||||    
T  9646380 aagatcccaaaccaaccactagaccaaccccaaat 9646414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41621758 - 41621800
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||    
T  41621758 ccaagatctcaagccaaccattaggccaaccccaaatgggtta 41621800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27528957 - 27528998
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||  ||||||||| |||||||    
T  27528957 ccaagatcccaagccaaccactaagccaaccccagatgggtt 27528998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34722205 - 34722164
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||||||||  |||||||||||| ||||    
T  34722205 ccaagatcccaagccaaccactaagccaaccccaaataggtt 34722164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34844920 - 34844961
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||| ||||| ||||||||| |||||||||||||||||    
T  34844920 ccaagatctcaagcaaaccactaggccaaccccaaatgggtt 34844961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43719227 - 43719264
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  43719227 ccaagatctcaaaccaaccactagaccaaccccaaatg 43719264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45787865 - 45787902
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  45787865 ccaagattccaagccaaccactaggccaaccccaaatg 45787902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 97529 - 97569
Alignment:
Q  2 caagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  97529 caagatcccaagccaaccactaggccaaccccaaatgggtt 97569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41806 - 41848
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtta 43  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  41806 ccaagatcccaagtcaaccactaggccaaccccaaatgggtta 41848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1218 - 1255
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1218 ccaagatcccaagccaaccactaggccaaccccaaatg 1255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8341 - 8382
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  8341 ccaagatcccgagccaaccactaaaccaaccccaaatgggtt 8382  T

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Target: scaffold0459 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10855 - 10892
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10855 ccaagatcccaagccaaccactaggccaaccccaaatg 10892  T

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Target: scaffold0366 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9461 - 9498
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9461 ccaagatcccaagccaaccactaggccaaccccaaatg 9498  T

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Target: scaffold0366; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12162 - 12199
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12162 ccaagatcccaagccaaccactaggccaaccccaaatg 12199  T

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Target: scaffold0328 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15026 - 14985
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  15026 ccaagatcccaggccaaccactaggccaaccccaaatgggtt 14985  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40360 - 40319
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  40360 ccaagatcctaagccaaccactaggccaaccccaaatgggtt 40319  T

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Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27811 - 27770
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  27811 ccaaaatcccaaaccaaccactagaccaaccccaaatgggtt 27770  T

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Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 53033 - 53073
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggt 41  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  53033 ccaagatcccaagccaaccactaggccaatcccaaatgggt 53073  T

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Target: scaffold0217 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7471 - 7512
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    |||||||||||||||||| ||||| |||||||||||| ||||    
T  7471 ccaagatcccaagccaactactaggccaaccccaaataggtt 7512  T

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Target: scaffold0200 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26705 - 26746
Alignment:
Q  1 ccaagatcccaagccaaccactagaccaaccccaaatgggtt 42  Q
    ||||||||| |||||||||| ||| |||||||||||||||||    
T  26705 ccaagatcctaagccaaccagtaggccaaccccaaatgggtt 26746  T

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