View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_4 (Length: 521)
Name: NF16105_low_4
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 14 - 521
Target Start/End: Complemental strand, 2019071 - 2018564
Alignment:
| Q |
14 |
aagcaaaggtaacatgctatataattctgaaatttttgctctgaccaactttggtaaggcttcaaccccctcttctggtggctgaggaatgcgactatta |
113 |
Q |
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| T |
2019071 |
aagcaaaggtaacatgctatgtaattctgaaatttttgctctgaccaactttggtaaggcttcaaccccctcttctggtggctgaggaatgcgactatta |
2018972 |
T |
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| Q |
114 |
actattgatagtgaagtcacttctacatcttcaacattgggacatccgcnnnnnnngtccaacatgttagcacggtttccaaagacgacgtcgttcaaat |
213 |
Q |
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| T |
2018971 |
actattgatagtgatgtcacttctacatcttcaacattgggacatccgcaaaaaaagtcaaacatgttagcacgatttccaaagacgacgtcgttcaaat |
2018872 |
T |
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| Q |
214 |
ttagggatttgagtaatggaaaattgatataggaagagccatctttgaaagtaacattttctagcttaagtgtgacaagattattgcaagtgtagaagcc |
313 |
Q |
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| T |
2018871 |
taagggatttgagtaatggaaaattgatataggaagagccatctttgaaagtaacattgtctagcttaagtgtgacaagattattgcaagtgtagaagcc |
2018772 |
T |
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| Q |
314 |
aaaaggcaattcgattaaagtgaccaagcagagatcgagttcctgaattcctttgaacgacagtctataaaggaagaggtcgaaagcatcttcttcgacg |
413 |
Q |
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| T |
2018771 |
aaaaggcaattcgattaaagtgaccaagcagagatcgagttcctgaattcctttgaacgacagtctataaaggaagaggtcgaaagcatcttcttcgacg |
2018672 |
T |
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| Q |
414 |
tcctcgaactcgaaggtaaaatgggagccacaagtgaggcgtaaggattgaatggattgtggtgatgaggtgaagaaattggaaaacctgtggaagtcgg |
513 |
Q |
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| T |
2018671 |
tcctcgaactcgaaggtaaaatgggagccacaagtgaggcgtaaggattgaatggattgtggtgatgaggtgacgaaattggaaaacctgtggaagtcgg |
2018572 |
T |
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| Q |
514 |
aaaagtag |
521 |
Q |
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| T |
2018571 |
aaaagtag |
2018564 |
T |
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